BAC Information

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BAC

Clone NameMSMg01-163C10
Chromosome13 (Build37)
Map Location 52,248,174 - 52,394,674
singlet/doubletdoublet
Overlap genenone
Upstream gene4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3, Ror2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163C10.T7 (MSMg01no163_c10.b1)MSMg01-163C10.TJ (MSMg01no163_c10.g1)
ACCAG362049AG362050
length761725
length of high quality
(start - end)
198 (45 - 242)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no163_c10.b1 PHD_FILE: MSMg01no163_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:41 2005CHROMAT_FILE: MSMg01no163_c10.g1 PHD_FILE: MSMg01no163_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,248,174 - 52,248,366)(52,394,390 - 52,394,674)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCCCTAAGCCCAGAACACAAAAGTGGAACTCTTTAATTCCTGT
GTAATCTTTGAGAAGGCAAACACTCCCTCACCCTGCTGGCTCCATTATAA
GGAGCCATGTTTGCACTGCCAACATCTTGGGGGCTCTTCTGAGGTTTGCA
GGGTTATGTTGTTGTCATTGTTGTTGTTGTTGTTGTTGTTGCTGTTAGCG
CCACTGCTTTTTCCCTCCTAACCCTTTATTATTATTTCTTTTACAACAAT
ACACAAAAACCTTTTTTTTTGCCCCCCAAACTTAAAACCGAGAGAAGTTT
TTAGTAATTCCCAAGACAAAACCCCCTGTAAATTATTAATTAATTAATAC
CTACCCCCCCCCCCTTAAAAAAAAAAAAAAACTTTTGTGGGGGGGGGGCG
ACAAAAAAAACTCTCACCCCTATAAATACCCACAACCCAAACCACACCCA
CTCAGTAGATTAATTATTAATTACCCCCTATCTACCCTTTTATCCCTCCC
TATTATTGAAACCCCCTATATTTATACTAATACCAAACCACCCATACTAT
CTCCATTTCTATCATTCCCACTCTTTTTTTAATATAAACAACAATTCGTA
CATTTTTCCCCTCTTTAACACAATACCCAATTATATCCTCTCAGATTATT
ATAAAACAAACTAACTTTTTTATTTTCTGTTATAATAACACTCCCTCTTT
TCTATCTTACT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATCTCCCTCTCCTGAACATTGGAA
TGACATATGGGCCTCACTACATTCACCCAGGATTTATGTGGGATCTGGGA
TCCAAACTCCAGACCTCAGACTTGCATGGCATAGCTAGAAGAGATGAGTC
ACCTCCCCTGTGTGGTGCTTGAACTTAGGTGGCTCAGCAGTTAAGAGTAC
TTTCTGCTCTTGCAAGAAGACCTGCGTTCACTTCCAAGCACCTACGGTGG
GCAGCTCACAATCACCTGTATCTCCAGCTCCAGGGGATCTGATACTGTCA
TCTGGCTTATCTTTTTCTCCCANACCCANCCCCACATACACTCTAGGTCA
CACTCTCACTTTTTCCCCCCCAGCAAATGTTTAGAACAGAAGCTGCGGTT
CTAAACCACTTGTATACTAGAGGTACCAGATAATAAAGAGAAGCCTCTCT
TGTGAGGGTTAAAATTGAAGGCAGGGTTGGAACAATATGGTCAAAATGGA
TGCTACATAATGAGAGATTATTCTGCAAGCACAAACAACGCGCGGTAGTG
CAAACACAGACCCATAATGTAATTTGAAACTGAGGGCTTAGAGCATAGTC
GGCCCGTCAACTCTGGAACCAGCGTCATAGCTTAGCGGAATGAAATTTTT
TGGAGCCTCTACCAACGTGTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_c10.b1 MSMg01no163_c10.b1 CHROMAT_FILE:
MSMg01no163_c10.b1 PHD_FILE: MSMg01no163_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:41 2005
         (198 letters)



>mm_chr13_52247970_52248567
          Length = 598

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcccctaagcccagaacacaaaagtggaactctttaattcctgtgtaatctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagcccctaagcccagaacacaaaagtggaactctttaattcctgtgtaatctt 264

                                                                       
Query: 65  tgagaaggcaaacactccctcaccctgctggctccattataaggagccatgtttgcactg 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagaaggaaaacactccctcaccctgctggctccattataaggagccatgtttgcactg 324

                                                                       
Query: 125 ccaacatcttgggggctcttctgaggtttgcagggttatgttgttgtcattgttgttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaacatcttgggggctcttctgaggtttgcagggttatgttgttgtcattgttgttgtt 384

                        
Query: 185 gttgttgttgttg 197
           |||||||||||||
Sbjct: 385 gttgttgttgttg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no163_c10.g1 MSMg01no163_c10.g1 CHROMAT_FILE:
MSMg01no163_c10.g1 PHD_FILE: MSMg01no163_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:41 2005
         (286 letters)



>mm_chr13_52394323_52395008
          Length = 686

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctccctctcctgaacattggaatgacatatgggcctcactacattcacccaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctatctccctctcctgaacattggaatgacatatgggcctcactacattcacccaggatt 293

                                                                       
Query: 61  tatgtgggatctgggatccaaactccagacctcagacttgcatggcatagctagaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tatgtgggatctgggatccaaactccagacctcagacttgcatggcatagctagaagaga 233

                                                                       
Query: 121 tgagtcacctcccctgtgtggtgcttgaacttaggtggctcagcagttaagagtactttc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgagtcacctcccctgtgtggtacttgaacttaggtggctcagcagttaagagtactttc 173

                                                                       
Query: 181 tgctcttgcaagaagacctgcgttcacttccaagcacctacggtgggcagctcacaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tgctcttgcaagaagacctgcgttcacttccaagcacctacggtgggcagctcacaatca 113

                                                        
Query: 241 cctgtatctccagctccaggggatctgatactgtcatctggctta 285
           |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 112 cctgtaactccagctccacgggatctgatactgtcatctggctta 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)