BAC Information

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BAC

Clone NameMSMg01-163C11
Chromosome13 (Build37)
Map Location 40,810,330 - 40,940,409
singlet/doubletdoublet
Overlap geneTcfap2a, EG621629, EG637157, LOC100039105
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894, LOC100039048
Downstream geneGcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163C11.T7 (MSMg01no163_c11.b1)MSMg01-163C11.TJ (MSMg01no163_c11.g1)
ACCAG362051AG362052
length708707
length of high quality
(start - end)		318 (50 - 367)281 (82 - 362)
definitionCHROMAT_FILE: MSMg01no163_c11.b1 PHD_FILE: MSMg01no163_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:41 2005CHROMAT_FILE: MSMg01no163_c11.g1 PHD_FILE: MSMg01no163_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,810,330 - 40,810,639)(40,940,129 - 40,940,409)
sequence
NAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCTCTAGATGAAATATTAGAGCAAATGGGGCATCTGGCCT
CTCTTTCTGGGTTCCATGAATATTTCCGCCACCTTTCCTTTTCTTCTCCC
AGAAAAATGAGAGTTAGCTTAAGCCATAAAAGTCTAAGCAAACAAGACTG
TAACGGCCATCTTCCTTGTACTAATGAACTAATCATTTGAGTTTCAGTTG
TCTTCTGAGACAGATTCTGGAGCCACTCAGGGGGGAGGGCTTCTTCTGTT
CTGACTCCACTCACAACCGGATCTGTCATTTCTAATGTTTAGTTCTGAGA
GTTTAGAATTTTGTTTTCCACACTCGCCCCTGAAAACCTAAAGGATCAAC
ATAAATAAAATAAAACTTTACCCCTAATAATAAAGTTAATGCCCCCGGTC
AGGAAGCAATAGCATGTCATTCCTTTAGCAGTACAAACAATCTTTTATCC
AAAAGAATACATCGGGCTTTATTGGGTCGTTTGTCTGAATACAGACTCAG
TGGAATATCTAAATGATACCCTGCTCTGAACTCCAAGTTGAAAGTAAGTT
TTTATTATACTTGAGGGAAGCAATGGGTTCAGCTGCTTATTGCAAAGAGC
AATTGCCAAGGGAGAGTTAAACTCAATTACTGTAACCATACTGAATAANA
AATACTGG

NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACTCTCATGCCTCAGT
TTCCCCAGTGCTTAGAATATAGAAATACGCCATACTAGACTTTCCTTGCT
TTTTGGGATGGTATCTCATTGTACTGGTCAGGCTGGCTTAAAACTCCTGG
ACCTTCTCATTTATCCACCATGGTAGAGGGGACTATGAAGACATACCACC
TCTCCCAGCAAGGAAATTCAACTTATCTGATTCCACAGGCCTCCAAGCTG
AAATACTCCCTCCTCTGTCTTAAAGAGGTCCTTCTTACTTTGTAGATCCT
GGAGTGACACGGTATCTTTGATCGCCTCCCCCCCGCGTCCCCAAGTCTAG
GCTGGAAGCCCTTCCACCTACCGCCATCCCGTCCTCGCTATAACTCTGTG
TTTGCTTTAATAAGCTCCCGGAACACTGAATCTGTCTGTTGATCACTGTG
TTTTTAGCATCTTGCTTATGGGAGACACAAAGGGGTGAGTTAGGCTGAGC
CTCTCTCTTACTCTATATCAGATGTCCTGGTTAGTTCTTTTTGCTTGTCG
TCTTGACATATCTAGACTCATTTGAGAGAAAACTACAGTTGGGGGAAATG
CCCCTCCAAGATTGGCCTGTGGTACATCTTCTTGGTTAATGACTACTGTA
GGGGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_c11.b1 MSMg01no163_c11.b1 CHROMAT_FILE:
MSMg01no163_c11.b1 PHD_FILE: MSMg01no163_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:41 2005
         (318 letters)



>mm_chr13_40810126_40810843
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctctagatgaaatattagagcaaatggggcatctggcctctctttctgggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctctagatgaaatattagagcaaatggggcatctggcctctctttctgggtt 264

                                                                       
Query: 65  ccatgaatatttccgccacctttccttttcttctcccagaaaaatgagagttagcttaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgaatatttccgccacctttccttttcttctcccagaaaaatgagagttagcttaag 324

                                                                       
Query: 125 ccataaaagtctaagcaaacaagactgtaacggccatcttccttgtactaatgaactaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccataaaagtctaagcaaacaagactgtaacggccatcttccttgtactaatgaactaat 384

                                                                       
Query: 185 catttgagtttcagttgtcttctgagacagattctggagccactcaggggggagggcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttgagtttcagttgtcttctgagacagattctggagccactcaggggggagggcttc 444

                                                                       
Query: 245 ttctgttctgactccactcacaaccggatctgtcatttctaatgtttagttctgagagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgttctgactccactcacaaccggatctgtcatttctaatgtttagttctgagagtt 504

                     
Query: 305 tagaattttg 314
           ||||||||||
Sbjct: 505 tagaattttg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no163_c11.g1 MSMg01no163_c11.g1 CHROMAT_FILE:
MSMg01no163_c11.g1 PHD_FILE: MSMg01no163_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:41 2005
         (281 letters)



>mm_chr13_40939751_40940431
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgactctcatgcctcagtttccccagtgcttagaatatagaaatacgccatactagact 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 659 ctgactctcatgcctcagtttccccagtgcttagaatatagaaatatgccatactagact 600

                                                                       
Query: 61  ttccttgctttttgggatggtatctcattgtactggtcaggctggcttaaaactcctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttccttgctttttgggatggtatctcattgtactggtcaggctggcttaaaactcctgga 540

                                                                       
Query: 121 ccttctcatttatccaccatggtagaggggactatgaagacataccacctctcccagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccttctcatttatccaccatggtagaggggactatgaagacataccacctctcccagcaa 480

                                                                       
Query: 181 ggaaattcaacttatctgattccacaggcctccaagctgaaatactccctcctctgtctt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggaaattcgacttatctgattccacaggcctccaagctgaaatactccctcctctgtctt 420

                                                    
Query: 241 aaagaggtccttcttactttgtagatcctggagtgacacgg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaagaggtccttcttactttgtagatcctggagtgacacgg 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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