BAC Information

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BAC

Clone NameMSMg01-163I19
Chromosome13 (Build37)
Map Location 71,889,426 - 71,889,696
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163I19.T7 (MSMg01no163_i19.b1)MSMg01-163I19.TJ (MSMg01no163_i19.g1)
ACCAG362318
length708727
length of high quality
(start - end)
---272 (79 - 350)
definitionCHROMAT_FILE: MSMg01no163_i19.b1 PHD_FILE: MSMg01no163_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:10 2005CHROMAT_FILE: MSMg01no163_i19.g1 PHD_FILE: MSMg01no163_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXX
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTACAGAGTAGGAGTTTGAA
TTAAATATGTTAATTACAGTTGCAGCCCTGGGGGATTAACGTACAGTCTC
TCAGGCTTGGTAAGCATCCTACTAGTGATCTATATAACCATTTATTTTTC
CTGTTTATTCTGAGACAGTCTAATTTGCCAAGCTGGTCTTAAACTTGGAA
TCCTCTCCACACTCGTAGCTGAGATTAAACATTTGTGCTAACCAGAGTAG
AAGTATCTAACTTTAATGGATTTTTTTTTATTTTTTTCTTTCATTGTGGA
GCTTCTAATTTGTTTTCCCCCCAGCGACCCCCCTTTAAGATATTGTGATT
TTGTCGGGTATTTCCCCCCACAAAAAAAAAAATTCCCATGGGGGGGGATG
AAGACTGTGTCAGGGACCATGCTCCGCATAAGGATATTCAGTTACTACAA
CGGATTGCGGAAAAGACATTCCTTTCTCTATTGTAATGCCGTTGCGAATT
TCATTATTAGTTTGCCGTGCCTGTGTGGTTGTGGCTTCCTAAACTCTTCC
TGCTTCCCATATAACCCATTTTTTAGCCCCATTCTTCCATATCACAGTTG
ATCATTTCTATGTCCTTTTGTGATTTTTCACTCCCATACTTTTTATAGTG
TTCCCTTATCGTATTTTCTCCAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_i19.g1 MSMg01no163_i19.g1 CHROMAT_FILE:
MSMg01no163_i19.g1 PHD_FILE: MSMg01no163_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:10 2005
         (272 letters)



>mm_chr13_71889226_71889897
          Length = 672

 Score =  456 bits (236), Expect = e-133
 Identities = 262/276 (94%), Gaps = 10/276 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttacagagtaggagtttgaattaaatatgttaattacagttgcagccctgggggatta 60
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 ttttatagagtaggagtttgaattaaatatgttaattacagttgcagtccttggggatta 260

                                                                       
Query: 61  acgtacagtctctcaggcttggtaagcatcctactagtgatctatataaccatttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtacagtctctcaggcttggtaagcatcctactagtgatctatataaccatttatttt 320

                                                                       
Query: 121 tcctgtttattctgagacagtctaatttgccaagctggtcttaaacttggaatcctctcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tcctgtttattctgagacagtctaatttgccaagctggtcttaaacttggcatcctctcc 380

                                                                       
Query: 181 acactcgtagctgagattaaacatttgtgctaaccagagtagaagtatctaactttaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactcgtagctgagattaaacatttgtgctaaccagagtagaagtatctaactttaatg 440

                                               
Query: 241 gatt-----tttttttatttttttctttcattgtgg 271
           ||||     ||     ||||||||||||||||||||
Sbjct: 441 gattccaactt-----atttttttctttcattgtgg 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)