BAC Information

Click to search

BAC

Clone NameMSMg01-164A11
Chromosome13 (Build37)
Map Location 69,061,319 - 69,212,108
singlet/doubletdoublet
Overlap geneAdcy2
Upstream geneLOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164A11.T7 (MSMg01no164_a11.b1)MSMg01-164A11.TJ (MSMg01no164_a11.g1)
ACCAG362644AG362645
length747777
length of high quality
(start - end)		566 (43 - 608)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no164_a11.b1 PHD_FILE: MSMg01no164_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:45 2005CHROMAT_FILE: MSMg01no164_a11.g1 PHD_FILE: MSMg01no164_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,211,547 - 69,212,108)(69,061,319 - 69,061,609)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTAAAACTCACTAATGGAAGAAAGAATTAGGCACGAGACCAGAAATG
TGATACTATTGAATGTGAAAGCTCACTATTCTAGTCATTCACTCCAAAAC
AAAATGACAAAACTCTTTGCAAAGCAGTACAAAATCTACAAGTAACAAAG
AATATTTTAAGAAAAAGTAACAATGAAGTTTAGCTGAGCAAATATTATCA
CATCAAAATGTCATACTAATTCACTAAAAGTATAGTTTGTCAAAGAGATG
TGAAAGTACTTACAATGCCATGTTTGCTTTAATCTGTCTATCCTACCCAT
TCACCTACTATCTAGCATTTACACATGCGTAGAAACAACACGTAATGTCC
ATCTACCAGTTACAAAGCAGCTGGTAGGTGGACAGCATGGAATTCAACAT
GAAATTTGAAGTCATGATTCATTTCTTCAATGTTGTCCATTTCTTCATTG
TTCAAATTGTTTGTAGTGAAGATTTGCTTTTTCCCCCCTCAAAACATTAA
TTAGAATGTTTCTAATATGTGCTTTCCTACATTGCTCAAATAGTTTTTCT
GACTCATAGAACTTACATCCCATCTTCCCATTCTGAGTCTCTGTGTACAT
TCACCTGTCACTTACTGCGAGGATACAGTAAGTTTGAAAATTTACATTCT
GCAACACCTGAAAGCCTTTAACTTAGCATACAAATTATAATTACTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGTGTACAGCATGACTTTTTCCAGGTACC
CTTAAAATAAGATGAACTACTTTGGACATAAGTATTATTTAAGAAGATTT
AATTAGCAAAATTGAAATAAAATATGTTTCTCAATCTTAAAAAAAATCCT
CAAATATATTCAGTTTAGGCCATCTCATTTAAAAAGTGTCACTGTTCCAT
TATAAATGCAATTAGTTTTATATGCTGGGAACAAATAAAGAATTCAGGTC
TTAAGAGGTATTAATTTTGTGTAATAACTGCAATAACTTTTTTGTGCAAT
AACTTTTTGTTTTCTTTATACCCACCACTTTCCCATCATGGTTGGATTTA
CCCTATTTTTCAGAGCCCCTGGACATATACTAAGGCCTTCCAAACAAATG
AATTAGATGATATAGTGAGGTCTGGGAATCCTGACCAAGCAATATTGGTT
ACCTGTGCATCCCTGACAGGAGTTACAGAGGTTGTGTGAATGATATTTAT
CTAATTTATTCACAGTTGTTGTAACTGATTTTATTTTTTGCCTTTGTTTC
GAAAACATAACGTCTTTAAGGTTCATTTAGTAGCGTTATGTTGTTTTTTC
TTCCTCGAATGGGTTCCTTTGATATTGAATTTATACTCTCATTTCCTTGT
GTTTCTTGTATAATATATTTCTCTTAAAACACACAAATTCTCTTTTATTA
TATTTAGTTTAACTAGTTTTTAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_a11.b1 MSMg01no164_a11.b1 CHROMAT_FILE:
MSMg01no164_a11.b1 PHD_FILE: MSMg01no164_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:45 2005
         (566 letters)



>mm_chr13_69211343_69212308
          Length = 966

 Score = 1079 bits (558), Expect = 0.0
 Identities = 561/562 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaaaactcactaatggaagaaagaattaggcacgagaccagaaatgtgatac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gaattctgtaaaacttactaatggaagaaagaattaggcacgagaccagaaatgtgatac 707

                                                                       
Query: 65  tattgaatgtgaaagctcactattctagtcattcactccaaaacaaaatgacaaaactct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tattgaatgtgaaagctcactattctagtcattcactccaaaacaaaatgacaaaactct 647

                                                                       
Query: 125 ttgcaaagcagtacaaaatctacaagtaacaaagaatattttaagaaaaagtaacaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttgcaaagcagtacaaaatctacaagtaacaaagaatattttaagaaaaagtaacaatga 587

                                                                       
Query: 185 agtttagctgagcaaatattatcacatcaaaatgtcatactaattcactaaaagtatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agtttagctgagcaaatattatcacatcaaaatgtcatactaattcactaaaagtatagt 527

                                                                       
Query: 245 ttgtcaaagagatgtgaaagtacttacaatgccatgtttgctttaatctgtctatcctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttgtcaaagagatgtgaaagtacttacaatgccatgtttgctttaatctgtctatcctac 467

                                                                       
Query: 305 ccattcacctactatctagcatttacacatgcgtagaaacaacacgtaatgtccatctac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccattcacctactatctagcatttacacatgcgtagaaacaacacgtaatgtccatctac 407

                                                                       
Query: 365 cagttacaaagcagctggtaggtggacagcatggaattcaacatgaaatttgaagtcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cagttacaaagcagctggtaggtggacagcatggaattcaacatgaaatttgaagtcatg 347

                                                                       
Query: 425 attcatttcttcaatgttgtccatttcttcattgttcaaattgtttgtagtgaagatttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 attcatttcttcaatgttgtccatttcttcattgttcaaattgtttgtagtgaagatttg 287

                                                                       
Query: 485 ctttttcccccctcaaaacattaattagaatgtttctaatatgtgctttcctacattgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctttttcccccctcaaaacattaattagaatgtttctaatatgtgctttcctacattgct 227

                                 
Query: 545 caaatagtttttctgactcata 566
           ||||||||||||||||||||||
Sbjct: 226 caaatagtttttctgactcata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_a11.g1 MSMg01no164_a11.g1 CHROMAT_FILE:
MSMg01no164_a11.g1 PHD_FILE: MSMg01no164_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:45 2005
         (291 letters)



>mm_chr13_69061119_69061809
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtgtacagcatgactttttccaggtacccttaaaataagatgaactactttggacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtgtacagcatgactttttccaggtacccttaaaataagatgaactactttggacat 260

                                                                       
Query: 61  aagtattatttaagaagatttaattagcaaaattgaaataaaatatgtttctcaatctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtattatttaagaagatttaattagcaaaattgaaataaaatatgtttctcaatctta 320

                                                                       
Query: 121 aaaaaaatcctcaaatatattcagtttaggccatctcatttaaaaagtgtcactgttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaatcctcaaatatattcagtttaggccatctcatttaaaaagtgtcactgttcca 380

                                                                       
Query: 181 ttataaatgcaattagttttatatgctgggaacaaataaagaattcaggtcttaagaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataaatgcaattagttttatatgctgggaacaaataaagaattcaggtcttaagaggt 440

                                                              
Query: 241 attaattttgtgtaataactgcaataacttttttgtgcaataactttttgt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaattttgtgtaataactgcaataacttttttgtgcaataactttttgt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |