BAC Information

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BAC

Clone NameMSMg01-164C19
Chromosome13 (Build37)
Map Location 20,904,247 - 20,904,554
singlet/doubletsinglet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164C19.T7 (MSMg01no164_c19.b1)MSMg01-164C19.TJ (MSMg01no164_c19.g1)
ACCAG362735AG362736
length749745
length of high quality
(start - end)
313 (46 - 358)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no164_c19.b1 PHD_FILE: MSMg01no164_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:57 2005CHROMAT_FILE: MSMg01no164_c19.g1 PHD_FILE: MSMg01no164_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAAATAAGACTCCAAGAAGTGTCCCTTTATGTCCCACGTTCCC
CAACAGTCCTGCTGATCTGAATGACAAGCTGGTTTCCACATGTCGCCTCC
TAGCCTGCCTATTAGGCCATTAATTATAACAAACTATAGTGTTCAATTAT
AAAGGAGGAAGAAAGTCTGCTGCTAATTAAATTGTGAAAAACATGGAGCC
TTCTGTCATATTCTTTCAGGCTGCAGGTCTTGATTCTCTGCTGAGGGTGC
TTTTCCTCCCTTCTTCTCTGCATGGTCTCTTGCAAGTCACCTCTTCCTAG
TCCTTCAGCTGCTTATTGCCCCCCCCCCCCTATAAACTTAGGAAGTACAT
TGTGACTTCCCCTTCCACAGGGATCACACTGTTTATCTGGGAGCCCATCA
GGTTCTAGTGTTGTCTTGCCCAGGACAAGTTTCTTAAGTTGAATGCATGT
TTCCTCTGTTAAAGCAATGTTACCAGAGTCCTCTGATTTGAGATGCAGAT
TTTGTCATTGTCCCTCCTATGCCCACCCAATACTTGAAGAAAGAGAGGAC
CAGTGAGGTGGTTTCTCTAGCCACGAAATCACCCAGTGTACGTTGCTCAT
GTGAGTCTCCTTCGAGAGGCAGTCCCTCAACACGTCCTGAGGATGCTTCC
TAAGATTTTCTTTACTCCCTTTTTTAGTACATGTGTGTGGTGCTCTTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACCGAATAGCTGAGAAG
CACTTGAAAAAATATTCAACATCCTTAATCATCAGTGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAAATCAAAA
ATTCAGGTGACAGCAAATGCTGGCTAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTATGGAAATCAGT
CTGGCGGTTCCTCAGATAATTGGAAATAGTACTACTGGAAGATCCAGTAA
TACCTCTTTTTTATTTTTACCCCTCCCCCCATGTTCCAACTGGTAATAAG
GACACATGCTCCACTATGCCCATAAAAGATTGTTTTAAGCCACCTAGTTC
AGAGTACTTTGTTATGTGGTAGATACCTAGAGCAGATGACTATGGAGTTT
TAGGTTATGACAATTTCCTTAGATGACTGAAGAAATTTACTCTTGAGTTT
CATGCCTCCTAGCATAGAATATGAAGCAATTGTGCCTTGGTATTTTATTA
ACCTGGAATATCACTTTGTGTCAACTATTCTGCAGTGTTTGCAGGGTTTG
GTGTGAATTTCTGTCCATGTACAGTATCAGACATTCAAAAGACCTTTTTA
ACTTAGAGATTCATGGCCCACAGTTCTGAGATATATTTTTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_c19.b1 MSMg01no164_c19.b1 CHROMAT_FILE:
MSMg01no164_c19.b1 PHD_FILE: MSMg01no164_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:57 2005
         (313 letters)



>mm_chr13_20904044_20904756
          Length = 713

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgaaaataagactccaagaagtgtccctttatgtcccacgttccccaacagtc 63
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct: 204 ggaattctgaaaataagactccaagaagtgtcccttcatgtcccacattccccaacaatc 263

                                                                       
Query: 64  ctgctgatctgaatgacaagctggtttccacatgtcgcctcctagcctgcctattaggcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgctgatctgaatgacaagctggtttccacatgtcgcctcctagcctgcctattaggcc 323

                                                                       
Query: 124 attaattataacaaactatagtgttcaattataaaggaggaagaaagtctgctgctaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attaattataacaaactatagtgttcaattataaaggaggaagaaagtctgctgctaatt 383

                                                                       
Query: 184 aaattgtgaaaaacatggagccttctgtcatattctttcaggctgcaggtcttgattctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaattgtgaaaaacatggagccttctgtcatattctttcaggctgcaggtcttgattctc 443

                                                                       
Query: 244 tgctgagggtgcttttcctcccttcttctctgcatggtctcttgcaagtcacctcttcct 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 tgctgagggtgcttttcctcccttcttttctgcatggtctcttgcaagtcacctcttcct 503

                   
Query: 304 agtccttc 311
           ||||||||
Sbjct: 504 agtccttc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)