BAC Information

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BAC

Clone NameMSMg01-164I07
Chromosome13 (Build37)
Map Location 3,762,171 - 3,762,458
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13
Downstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I07.T7 (MSMg01no164_i07.b1)MSMg01-164I07.TJ (MSMg01no164_i07.g1)
ACCAG362970AG362971
length771743
length of high quality
(start - end)
318 (45 - 362)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no164_i07.b1 PHD_FILE: MSMg01no164_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:23 2005CHROMAT_FILE: MSMg01no164_i07.g1 PHD_FILE: MSMg01no164_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAA
ACAGAGTAAAAAAAACCCTGTGCTAGTACGTTCTCTTGGCTTGCAGTTCC
AGGCCCCATGCCTGCTGCCTCTACTCCAGCACCATAGGTCCTAGAGCTCT
CTGGAATTGTAAGCCCAAATAGACACCTTTTTTCTATGTTGTCTTAGTTA
CAGTGCTTTATCATAACAATAGAAAAGTCACTAATATATGATTAATATTT
TTTTTTTGTCCTCAGGGTCTATACCATGTTGGGAATACATGGTCCAAACA
CAAAGTTGTATTTTTTATACCGCCCCACCCCCCATGAAAATCCCGAGTCA
TAGTTTTTTGAGACACCGCACGGAAAAAGTAAGACCTAGCTACTGCTGAT
TCAAATGGATTTAACTTTAGATTTGCTGAATTTTTTGTAAGTTGATATTA
TGCCAATGATATGTCATTTTTGTGTATATTTTTTACCGATTTTTACAGTG
CTATTGTAAAACAAAAAATATTACAGTGTTGGTCACATCCCCTTGCTTGA
CTTTATCTACCCCGCAAACCATTGCTTCTGTCACAAATTTATTTTTTTCT
CTTTTTATTTAAACAACACCCCTAATTCTACCCCTACACTTTCTACGTTA
AACATTAACTAATTTTGGTATATTACAATAAAACCGCGATGTGTTCAACA
TCAATGGTGCGTGGTTGGTAN
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCCTGGGCCTTGAAAGCATCAACCCTGC
AAGTGATGAGCCCAAAGGGATATCCAGAGACTTAGCTCTGAAGGAATCAC
AGGCTACCCCAATGAAGCCAAAGTCTTGCAATGCTAAAGCTTGTTCATAA
ATCTGGTAGGCAGTGCTGGCCTTGAGGCAAACTTAGGAGTGGATAAAGAT
TATTTAACTCTGGGGATCAAGGTTCCTAGTCCCCATGGGGCAGCCATCTG
GTTTGAGGGGCTCTTCCTCCTTTCCTTCAGCCCCATTCATTGGATCATCT
TTGAGAAGTTCATTTCCCTACACACCCTCTGCTCTGCACTACAAATTCCC
CAGTGCCAAAGCCCACTATTTCCTTTCTGATGCTGTTGCTGTGATAAAAT
GTTTTCCCAAAAGCAACTTTAGGAAGAAAGTGCTTGCTGTAGCTTACAGT
TCAAGGATATAATTTATCAAGGTGGGGAAGTCAAGGTGGTGGGAGTTTGA
AGCAGCTGGTATTGTGACATCCACAACAAGAGAAGCAGAAAGCAATGCAT
GCTTCTGCTTGGCTCTTCTCTACTTGTACATTTCAGGATCCCTGCAAGGA
AATGTGCCACCCATGGGGGGCTCATCTTTCCCCCTCAATTAAATTCATCA
GGATTGGCTACCTTCTACTGCATCTGGCATGACCCTGAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i07.g1 MSMg01no164_i07.g1 CHROMAT_FILE:
MSMg01no164_i07.g1 PHD_FILE: MSMg01no164_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:24 2005
         (289 letters)



>mm_chr13_3761971_3762659
          Length = 689

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctgggccttgaaagcatcaaccctgcaagtgatgagcccaaagggatatccagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctcctgggccttgaaagcatcaaccctgcaagtgatgagcccaaagggatatccagaga 429

                                                                       
Query: 61  cttagctctgaaggaatcacaggctaccccaatgaagccaaagtcttgcaatgctaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttagctctgaaggaatcacaggctaccccaatgaagccaaagtcttgcaatgctaaagc 369

                                                                       
Query: 121 ttgttcataaatctggtaggcagtgctggccttgaggcaaacttaggagtggataaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgttcataaatctggtaggcagtgctggccttgaggcaaacttaggagtggataaagat 309

                                                                       
Query: 181 tatttaactctggggatcaaggttcctagtccccatggggcagccatctggtttgagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tatttaactctggggatcaaggttcctagtccccatggggcagccatctggtttgagggg 249

                                                           
Query: 241 ctcttcctcctttccttcagccccattcattggatcatctttgagaag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctcttcctcctttccttcagccccattcattggatcatctttgagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)