BAC Information

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BAC

Clone NameMSMg01-164O13
Chromosome13 (Build37)
Map Location 83,084,162 - 83,084,475
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164O13.T7 (MSMg01no164_o13.b1)MSMg01-164O13.TJ (MSMg01no164_o13.g1)
ACCAG363227AG363228
length745751
length of high quality
(start - end)
318 (42 - 359)295 (69 - 363)
definitionCHROMAT_FILE: MSMg01no164_o13.b1 PHD_FILE: MSMg01no164_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:53 2005CHROMAT_FILE: MSMg01no164_o13.g1 PHD_FILE: MSMg01no164_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTAGAAAAATTTGACAACCATTAGTAATTTTATATTAGCTTAAATTAT
TGATAGACTTATATTTGCTAGAAAATGCTGGAGATAAACTTAGTATCTTC
TATTTCTTCCCTGTCCATCCAGATACATTTGTCTTACAGCCTTATGACTA
TTGTTTTTAGTATGTTCACAAAACCCCCTACCTATTGATATGTCTTTTCT
TTAACTCAGCCATCTGTTTTTTTCCCATAGTGTTTCTATCTTGTCACTGA
ATTATGAGTTCTTAATGTCATAAGTGTTTCAACTCTTTGCTTATCACATT
TGTTGTATTTTCCATACCCCCCACCTTAATTACATTTGCTATTGAATTTA
AATGAGTACATTTATTTAAATTTCAACTAGTTCCATTATTATTTCTATGT
GTACAATTAATATTAAAATTATCTGCCCATTCATATGTTTGATTCTGTAA
TAAAACACCAAATATTCTATGAGTGCAGGTTTACACATATAATTCAGAGC
CCTTTTTTTTGGATGAAATGTCGTAAATATAGAATGTTAGCAGCTATTAA
AAATCTGCAGTTTCCAACTGATTATCTTCAAGTAATATTCACAAAACTTA
AGATCTGTAAAGGTCTTGTATCTTAATTAATTCTTTTCTTTCACACTATT
AGTTTATTGTGGAGGATGAATTGTTAATGATTTCATTAATTTGAA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCCATTTTTAATAGG
GTTATTTGGTTTCTCTCGCAGTCTAATTGCTTGAGTTCTTTGTATATATT
GGATACTAGCCCTCTATCAGATGTAGGGTTGGTAAAGATCTTTTCCCAAT
CTGTTTGTTGCTCTTTTGACCTGTTGACAGTGTCCCTTGCCTGACAGAAG
CTTTACAATTTTATGAGGTCCCATTTGTAGAGCATAAGCCATTGGTGTTC
TATTCAGGAAAATTTCCCCTGTACCCATGTATTCAAGACTTTTCCTCACT
TTCTTTTCTATTAAACTCCCCGTATCTGGATTTATGTGGAGGTCCTTGAT
CCAGCTGGCCCTGAGCTTTGTAAAGGGAGATATGAATTGGTCAACTTGTA
TTCTTCCACTTGAACCAACACCATTTGTTGAAAATGCTGTTTATTTTCCA
TTATATGGCTTTAGCTTCTTTGTCAAAGATCTAGTGACCATAGATATATG
GTTTCATTTCCAGGTCTTCATTTCTATTTCATTGGTCTACTCGCCTGTCA
TTGTTACAGTTACATGCATCTTTTTTTTCTTTATCACTAATGCTCGGTAT
TGAATTTTGAATATTATGTATATTTTCTCTCTTTATTTATTTCCTTTTTT
TTGGGTTTATCTCCCTCTCTTTTTTTTTTTTATCTTTCATTTTTCTTTCT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_o13.b1 MSMg01no164_o13.b1 CHROMAT_FILE:
MSMg01no164_o13.b1 PHD_FILE: MSMg01no164_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:53 2005
         (318 letters)



>mm_chr13_83083958_83084675
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactagaaaaatttgacaaccattagtaattttatattagcttaaattattgata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcactagaaaaatttgacaaccattagtaattttatattagcttaaattattgata 459

                                                                       
Query: 65  gacttatatttgctagaaaatgctggagataaacttagtatcttctatttcttccctgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gacttatatttgctagaaaatgctggagataaacttagtatcttctatttcttccctgtc 399

                                                                       
Query: 125 catccagatacatttgtcttacagccttatgactattgtttttagtatgttcacaaaacc 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 398 catccagatacatttgtcttacagccttatgactagtgtttttagtatgttcacaaaacc 339

                                                                       
Query: 185 ccctacctattgatatgtcttttctttaactcagccatctgtttttttcccatagtgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccctacctattgatatgtcttttctttaactcagccatctgtttttttcccatagtgttt 279

                                                                       
Query: 245 ctatcttgtcactgaattatgagttcttaatgtcataagtgtttcaactctttgcttatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctatcttgtcactgaattatgagttcttaatgtcataagtgtttcaactctttgcttatc 219

                         
Query: 305 acatttgttgtatt 318
           ||||||||||||||
Sbjct: 218 acatttgttgtatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)