Query= MSMg01no166_c04.b1 MSMg01no166_c04.b1 CHROMAT_FILE:
MSMg01no166_c04.b1 PHD_FILE: MSMg01no166_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:32 2005
(658 letters)
>mm_chr13_46827012_46828069
Length = 1058
Score = 1226 bits (634), Expect = 0.0
Identities = 650/656 (99%), Gaps = 2/656 (0%)
Strand = Plus / Minus
Query: 5 gaattctggcagtgctaagtttcagcacattgtgtggacagaggctgttttacaagttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gaattctggcagtgctaagtttcagcacattgtgtggacagaggctgttttacaagttta 959
Query: 65 tggatgagcatagcaatcgctaagactaaaagaacctatgggttctcatgag--tttttt 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 958 tggatgagcatagcaatcgctaagactaaaagaacctatgggttctcatgagtttttttt 899
Query: 123 ttttaattagattcattcattttgttttatgagtgttttacatacatgtatgtatgtgca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ttttaattagattcattcattttgttttatgagtgttttacatacatgtatgtatgtgca 839
Query: 183 ccgcatgtgtgcctggtgcccacaaaggtcagagaggtcattggagcccctcgaaataaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ccgcatgtgtgcctggtgcccacaaaggtcagagaggtcattggagcccctcgaaataaa 779
Query: 243 gttagagatggtcataagctgtcaggtggttgctgggaattgaacctgtgtcctctgcaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gttagagatggtcataagctgtcaggtggttgctgggaattgaacctgtgtcctctgcaa 719
Query: 303 aagcaggagctgttcttaaccgctgacctatctcctagccccaataaatcacttagtccc 362
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 718 aagcaggagctgctcttaaccgctgagctatctcctagccccaataaatcacttagtccc 659
Query: 363 agctggtgattcaatacctgccttcagcatcaggataaaattggtattgtacatttggtc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agctggtgattcaatacctgccttcagcatcaggataaaattggtattgtacatttggtc 599
Query: 423 attatttcatctactagagctgaatttccattaaacatgcaaaatatccatacattaaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 attatttcatctactagagctgaatttccattaaacatgcaaaatatccatacattaaac 539
Query: 483 accttatcgataattccaagtcaccagtaatgcacctgtgtcacattaaggaaagaaata 542
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 accttattgataattccaagtcaccagtaatgcacctgtgtcacattaaggaaagaaata 479
Query: 543 caaatacttagtcatttaactaagagcaagttgagatctgaattctctactgcctgttcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaatacttagtcatttaactaagagcaagttgagatctgaattctctactgcctgttcc 419
Query: 603 ttgtgtctccccttctgacaaagggctctctactcattaaactgcacaaaaagcat 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgtgtctcgccttctgacaaagggctctctactcattaaactgcacaaaaagcat 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_c04.g1 MSMg01no166_c04.g1 CHROMAT_FILE:
MSMg01no166_c04.g1 PHD_FILE: MSMg01no166_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:32 2005
(664 letters)
>mm_chr13_46678529_46679592
Length = 1064
Score = 1241 bits (642), Expect = 0.0
Identities = 655/662 (98%), Gaps = 5/662 (0%)
Strand = Plus / Plus
Query: 1 caatattgaggtgtctttcctaggacagcccctgggaaggttctctgaactcaggacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatattgaggtgtctttcctaggacagcccctgggaaggttctctgaactcaggacttc 260
Query: 61 ctaattttctatagctcaaggcttaaacaggaaaagagtcaggccagggtagtggcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaattttctatagctcaaggcttaaacaggaaaagagtcaggccagggtagtggcaagc 320
Query: 121 atgcaaacattgggtctaccgccatggtgtgtagaaagacataaaggagggaggcttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 atgcaaacattgggtctaccgccatggtgtgtagaaagacataaaggaggggggcttttt 380
Query: 181 gagccaattgcatccacctcagaaccattctgctcctgtttgcttctttgtgtccttgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagccaattgcatccacctcagaaccattctgctcctgtttgcttctttgtgtccttgtc 440
Query: 241 catcagcctccaaggcgggaagagtgacgtgtaggagttaatcattaagagagcagtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcagcctccaaggcgggaagagtgacgtgtaggagttaatcattaagagagcagtgtt 500
Query: 301 gaagggctgcccacactcttggaacatgtcagccagccgccttcatcgccttcacggttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagggctgcccacactcttggaacatgtcagccagccgccttcatcgccttcacggttt 560
Query: 361 tcttttcttttcttttcttttcttcttttttttaagtgttttgagtcagcttatcctaaa 420
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tcttttcttttcttttctt-----cttttttttaagtgttttgagtcaggttatcctaaa 615
Query: 421 ctttgtttctccaacactgactcttctggcccacatgttttccctgacattcaaccaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctttgtttctccaacactgactcttctggcccacatgttttccctgacattcaaccaatg 675
Query: 481 tagtcgttgtcatatacgatgagtaactgtgggcagaaaccctgaagcctcagggaggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagtcgttgtcatatacgatgagtaactgtgggcagaaaccctgaagcctcagggaggga 735
Query: 541 tccatgtgagagaatgcgatggtttggtactccggagcagtgaatgtctgcccggtgatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tccatgtgagagaatgcgatggtttggtactccggagcagtgaatgtctgcccggtgatc 795
Query: 601 agtgtgcttacagcctggcccaaaacacatgggttacttacctttctcgttgctctgaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agtgtgcttacagcctggcccaaaacacatgggttacttacctttctcgttgctctgaca 855
Query: 661 aa 662
||
Sbjct: 856 aa 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
