Query= MSMg01no167_d07.b1 MSMg01no167_d07.b1 CHROMAT_FILE:
MSMg01no167_d07.b1 PHD_FILE: MSMg01no167_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:55 2005
(706 letters)
>mm_chr13_74090387_74091491
Length = 1105
Score = 1226 bits (634), Expect = 0.0
Identities = 682/698 (97%), Gaps = 1/698 (0%)
Strand = Plus / Minus
Query: 7 gaattcacccttttcccatgaattcagaaatcaccaacagcacaacctcacttcagggcc 66
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattcacccttagacaatgaattcagaaatcaccaacagcacaacctcacttcagggcc 844
Query: 67 acagggagtagtttcttgcccataccagacaaagtatgagtaaaattagcatatgctagg 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 843 acagggagtagtttcttgcccataccagacaaagtatgagtaaaattggcatatgctagg 784
Query: 127 ccagcaagatacctcatcagataaaagcacttgctgctcaagtctaacaacttgagttca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 783 ccagcaagatacctcatcagataaaagcacttgctgctcaagtctaacaacttgagctca 724
Query: 187 gcccaggaacccacagtgggagaacggattctcaaaatttttcctcttttctttttatgt 246
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 723 gcccaggaacccacagtgggagaatggattctcaaaatttttcctcttttctttttatgt 664
Query: 247 gcaccaggcattgcacatctacaaagtagtaaggaaaaggctttaaataaatggcctgaa 306
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 663 gcaccaggcattgcacatctacaaagtagtaagaaaaaggctttaaataaatggcctgaa 604
Query: 307 aagaaacacaacaaaaagatggcaaccagaacaggagccaagcacatggctggtagggct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aagaaacacaacaaaaagatggcaaccagaacaggagccaagcacatggctggtagggct 544
Query: 367 gaattctccatgaggcacaagaattctgtccatctcgtcagacaaagaggaggctaccag 426
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 543 gaattctccatgaggcacaagaattctgtccatctcgttagacaaagaggaggctaccag 484
Query: 427 gccagaccaagagacatggaagccatgggccaaaatagtctcagagctagtatggacaga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gccagaccaagagacatggaagccatgggccaaaatagtctcagagctagtatggacaga 424
Query: 487 tttttttttttaactctacctagccagaacagagaccttctagaaaactttggccatgaa 546
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 423 tttttttttttaactctacctagccagaacagagaccatctagaaaactttggccatgag 364
Query: 547 aagagacccagcaatactactcttttgcattatggtcacacagccttgggataatggtcg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 363 aagagacccagcaatactactcttttgcattatggtcacacagccttgggataatggccg 304
Query: 607 tactatatcacaagtaacaactttcattccaaattgaagatcaatgctcttcaaatgaag 666
||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 303 tactagatcacaagtaacaactt-cattccaaaatgaagatcaatgctcttcaaatgaag 245
Query: 667 aaaataaaatctctagaagttgagaaatagtccatttg 704
|||||||||||||||||||||||||||||| |||||||
Sbjct: 244 aaaataaaatctctagaagttgagaaatagcccatttg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1105
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1095
Effective search space: 762120
Effective search space used: 762120
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no167_d07.g1 MSMg01no167_d07.g1 CHROMAT_FILE:
MSMg01no167_d07.g1 PHD_FILE: MSMg01no167_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:55 2005
(504 letters)
>mm_chr13_73971165_73972068
Length = 904
Score = 716 bits (370), Expect = 0.0
Identities = 446/506 (88%), Gaps = 57/506 (11%)
Strand = Plus / Plus
Query: 1 cacttccaggtgccggcccactcgtctgtctggaaacgcttggccagctttgaagtcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttccaggtgccggcccactcgtctgtctggaaacgcttggccagctttgaagtcacg 260
Query: 61 actcagtttcagcagctaaatagtttcagatgtgacaatctagttttatgggcttaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagtttcagcagctaaatagtttcagatgtgacaatctagttttatgggcttaataa 320
Query: 121 ttccgacacatgtgcagtaggggcccagcagttcctgtggtgcctggcggatcccctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccgacacatgtgcagtaggggcccagcagttcctgtggtgcctggcggatcccctgca 380
Query: 181 ggggctgagagccatgaagtcctgagtgcctgagaatctaagtcaagatgtttaaggatg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggctgagagccatgaagtcctgaatgcctgagaatctaagtcaagatgtttaaggatg 440
Query: 241 gatgatccagagccaccgcagaaagggaacacaacaagtgcacatgagcgtcttgctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgatccagagccaccgcagaaagggaacacaacaagtgcacatgagcgtcttgctttc 500
Query: 301 ttctaagatctgcggggtgtttttactctacacacacacacacacacacacacacacaca 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctaggatctgcggggtgtttttactctacacacacacacacacacacacacacaca-- 558
Query: 361 cacacgcacgcacgcaagcatgcatgcacgcacgcacgcacgcacgcacacactcatttt 420
| | | ||||
Sbjct: 559 --------------------t---t----------------------------t--tttt 565
Query: 421 tttt--aattgggggaggcttggaccattttcatcaggggttgtataaataaacccttga 478
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttttaaattgggggagtcttggaccattttcatcaggggttgtataaataaacccttga 625
Query: 479 tgaaatttataaaggctgggtagctg 504
||||||||||||||||||||||||||
Sbjct: 626 tgaaatttataaaggctgggtagctg 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
