BAC Information

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BAC

Clone NameMSMg01-167F03
Chromosome13 (Build37)
Map Location 25,998,462 - 25,998,931
singlet/doubletsinglet
Overlap genenone
Upstream geneAldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167F03.T7 (MSMg01no167_f03.b1)MSMg01-167F03.TJ (MSMg01no167_f03.g1)
ACCAG364847AG364848
length719730
length of high quality
(start - end)
477 (38 - 514)467 (77 - 543)
definitionCHROMAT_FILE: MSMg01no167_f03.b1 PHD_FILE: MSMg01no167_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:03 2005CHROMAT_FILE: MSMg01no167_f03.g1 PHD_FILE: MSMg01no167_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGA
ATCATCCCTGGAGTCAGGACACTATCCCAGTCTAATTCCAAAGACCAAGT
TGGAGTCCAGTTGTCCTATTATGAAGTAGCTTGGATGGGAAATGTCCCCA
TGAAGCTCAGAATTTGAATATTAGTACTGGCAGTTTCTGGGTCCTGGGTT
TAGGCTGTGCAGCCTTGCTTGAGGAAACGTGGCAATGGGGGCATCCCTTG
AGAGTTTAAAGCCTCATATCATGTGGAAATTGTTCTGTCTGCTTCCACTT
ATTTTTGAGGAATTGATCACTCAGCTTCCTACTCCTGCAACCATTTCTAT
TGTTTACTGCCATGCTTTCCTGCTATGATGGCCCTTATCTCTCTGGAACC
ATAAAGCCAAAATAACTTCTTTCTTTCCTAAGTTGCTTTTGGTGATGTCT
TTTTAAACCAGCAACAGAAAAGTAGCCAAGATTCTCCACTTAGCTTCTCC
CATGGGATTAAGAGGCTTTTGTCAAGATGGCTTCATAGGTTTTGAGCACT
TTTAATTTTTACCTAGAATGAGTTTTGATCATTCCTTCCTACCTCAAGTT
GTGCATAATGATACCGAAGGCGTATCTTAAAGTATTAACTAAAGGAATTG
TTTCTGCCCTACTGCATGATGTTTTTGTTAAAGCCCCTGGGCGTTTGTGG
TCTCTGTATCTGGTGGCGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAACTGTTAAAAGAAATAG
GAGGAAATCTAAGTACTTTAACTATGCTTCATTTTCATAGATTGGAAGAT
AATTTTTAAGATGTTCATTCTTTATGCTTCATTCAACCATGCATACACTA
AACTGGAAGGAAAAAGAGATTAGCCCAGGCCTGAATTAGAAATGACAAAC
AGATTTTTGAAGCACTCCATACTTTTCTTTGTCAACCGGGTTATAATCTC
CCATTCATTTCTGTAATATCATTTTCAAGAAAATTGTGGTCACATCTTTC
TAGATTCCAGCTCTGTTTACGTATCAGAAATAGGAAAACCAGCCTCCTAA
TCATAGAAATAAGCGTACACTTCAAATACTCTGAGTTGGGTTGTCACTTT
TTTTTTTCTTGAAACAATTATACAAAATTTAAATGAACACTCTTTCTTCT
AACTTCCTTGATTTAAAGATTAATGATATTTTAAAACACAAGTAAGACTA
AGAACAGAAAGCAATGTTTCAATTTTTCCCATATGATACATGGTTCTTAA
ATGTTCCCTAATAACATGATTCCTTTTGATTTAAAGCAGACTCTTACTGT
CTTATACAGGATGATCTCAAATTAATTTTTTATTTTAATTTCTGCATTTT
GTTTCTTTATTTCTATGAGCCAGCGCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_f03.g1 MSMg01no167_f03.g1 CHROMAT_FILE:
MSMg01no167_f03.g1 PHD_FILE: MSMg01no167_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:03 2005
         (467 letters)



>mm_chr13_25998062_25998931
          Length = 870

 Score =  808 bits (418), Expect = 0.0
 Identities = 456/470 (97%), Gaps = 3/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagaactgttaaaagaaataggaggaaatctaagtactttaactatgcttcattttc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 caaaagaactgctaaaagaaataggaggaaatctaagtactttaactatgcttcattttc 811

                                                                       
Query: 61  atagattggaagataatttttaagatgttcattctttatgcttcattcaaccatgcatac 120
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 810 atagattggaagataatttttaagatgttcattctttacgcttgattcaaccatgcatac 751

                                                                       
Query: 121 actaaactggaaggaaaaagagattagcccaggcctgaattagaaatgacaaacagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 actaaactggaaggaaaaagagattagcccaggcctgaattagaaatgacaaacagattt 691

                                                                       
Query: 181 ttgaagcactccatacttttctttgtcaaccgggttataatctcccattcatttctgtaa 240
           |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 690 ttgaagcattccatacttttctttgtcaacctggttataatatcccattcatttctgtaa 631

                                                                       
Query: 241 tatcattttcaagaaaattgtggtcacatctttctagattccagctctgtttacgtatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tatcattttcaagaaaattgtggtcacatctttctagattccagctctgtttacgtatca 571

                                                                       
Query: 301 gaaataggaaaaccagcctcctaatcatagaaataagcgtacacttcaaatactctgagt 360
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 570 gaaataggaaaaccagcctcctaatcatagaaataagtgtatacttcaaatactctgagt 511

                                                                       
Query: 361 tgggttgtcacttttt---tttttcttgaaacaattatacaaaatttaaatgaacactct 417
           ||||||||| ||||||   ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 510 tgggttgtccctttttctttttttcttgaaacaattatacgaaatttaaatgaacactct 451

                                                             
Query: 418 ttcttctaacttccttgatttaaagattaatgatattttaaaacacaagt 467
           |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcttccaacttccttgatttaaagattaatgatattttaaaacacaagt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 870
Length adjustment: 10
Effective length of query: 457
Effective length of database: 860
Effective search space:   393020
Effective search space used:   393020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)