BAC Information

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BAC

Clone NameMSMg01-168D16
Chromosome13 (Build37)
Map Location 90,275,918 - 90,276,196
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168D16.T7 (MSMg01no168_d16.b1)MSMg01-168D16.TJ (MSMg01no168_d16.g1)
ACCAG365481AG365482
length711708
length of high quality
(start - end)
311 (51 - 361)280 (76 - 355)
definitionCHROMAT_FILE: MSMg01no168_d16.b1 PHD_FILE: MSMg01no168_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:18 2005CHROMAT_FILE: MSMg01no168_d16.g1 PHD_FILE: MSMg01no168_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGAGGAATACAGAATGGCAGAGAAACACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACC
CAAGATATAAGATACAATTTCTTTTTTCATGAAACTCAAGAAAAATGAAG
ACTGAAGTGTGGATACTATGCNNNTCTTACCCGTGGGAAAAAATACCCTT
GGAAGGAGTTACAGAGACAAAGAATGAAACTGAGATGAAGGGATGGGCCA
TGTACAGACTTCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACG
CTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGT
AGCTGTCTCTTGCGAGACTATGCCGGGGCCTAGCAAACACATAAGTGGAT
GCTCACAGCCAGCTAATGGATGGATCACAGGTCTCCCATTGGAGGATCTA
CATAATGTTACCACGGAGCTAATGGGACCTGCATCCCTATTTGCGGATCT
ACATTATGATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAGCTACTGCCTGGTAGAGGAAG
AGAATCAAACACTGGCTCTTGGCAGCAGCTTCCCCTCCTGCAGCTGTTGA
ATGCTAAATTAATTATTTCTGATGTGTTTCTTCAGCTGTGTGAGACAGGG
CTGGCCTAGCACAGCAAGAGCCTTTCTAGTCCTTAACACTGCACTTGAAT
GTCAGAGCTATAATAAAGGGGACAAAGTGAAGTGACTTTTTCCCAGGACA
GAAATTGATGCTGATTATTTTTAGGCATATTTCCTGCTGTTCATGTGCAT
GAAGTTAATGATTACACNNTACTGNCCCCCTTATGTGGCGGCTTTTGAAG
CTTAATAGATTTTGCACAGAAAAATAAGTTGAGCAAATGGAGCCTTCGAG
GAAAAAAAGCACTATTCAGATGGAACCATAACAGAGCCTCTGTAAGGCTG
AGCAGTAATGGATGGGCTCAGTGGGAGACTGTACAGTAAAAAGATGGAAG
TGACTTTTCTGCCTTCTGCTAAAAGAAACAATCAAGGCAATCCATCTGTG
GTTCGCTAACTTGGCATTAGATGCCCTGTAACAATTCAGTACTGTACACT
TGGTGGGTGTGCCCACTAAGCACAGCAATTTTTGAGGTAAGACTCCTAGA
AAGCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_d16.g1 MSMg01no168_d16.g1 CHROMAT_FILE:
MSMg01no168_d16.g1 PHD_FILE: MSMg01no168_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:18 2005
         (280 letters)



>mm_chr13_90275718_90276397
          Length = 680

 Score =  485 bits (251), Expect = e-142
 Identities = 272/285 (95%), Gaps = 12/285 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagctactgcctggtagaggaagagaatcaaacactggctcttggcagcagcttcccc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 actagctactgcctggtagaggaagagaatcaaacattggctcttggcagcagcttcccc 260

                                                                       
Query: 61  tcctgcagctgttgaatgctaaattaattatttctgatgtgtttcttcagctgtgtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgcagctgttgaatgctaaattaattatttctgatgtgtttcttcagctgtgtgaga 320

                                                                       
Query: 121 cagggctggcctagcacagcaagagcctttctagtccttaacactgcacttgaatgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggctggcctagcacagcaagagcctttctagtccttaacactgcacttgaatgtcag 380

                                                                       
Query: 181 agctataataaaggggacaaagtgaagtgactttttcccaggacagaaattgatgctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agctataataaaggggacaaagtgaagtgactttttcccaggacagaaattgatgctga- 439

                                                        
Query: 241 ta------tttttaggcatatttcctgctgttcatgtgcatgaag 279
            |      |    ||||||||||||||||||||||||||||||||
Sbjct: 440 -aaagcact----aggcatatttcctgctgttcatgtgcatgaag 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)