BAC Information

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BAC

Clone NameMSMg01-168D20
Chromosome13 (Build37)
Map Location 10,268,878 - 10,269,158
singlet/doubletsinglet
Overlap geneChrm3
Upstream geneLOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168D20.T7 (MSMg01no168_d20.b1)MSMg01-168D20.TJ (MSMg01no168_d20.g1)
ACCAG365488AG365489
length731740
length of high quality
(start - end)
272 (45 - 316)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no168_d20.b1 PHD_FILE: MSMg01no168_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:19 2005CHROMAT_FILE: MSMg01no168_d20.g1 PHD_FILE: MSMg01no168_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGACCCACAAATGACAGAAAAACATACAATGATTTATCTTCCTG
CTTTAATGCTTATTTTACTTAAAATAATGTTCTGAAGTGGCATTCCTTTT
CTCCAACGAAGTGACAAAATTTCATTCTTCCTTATGAACAAATAAAACTT
CACTGTGTCTGTATAACACATTTCCACTCATTTGTTGGTGGGCTCCTGGG
ATGGTTTTATATACTCACTCCTATGAAAATTATTACGGAAAGATGGCTGT
GCAAGCATCACTGGTATCTTTATAATATGCTACCTTGGAGTTTGTTGGGG
GCATATTCAATAANGTCTACGGACAAAAACCCCATATCTTTAGTCTTAGT
TTGTCAGTGTTGCTGTTGATAAAAAAAAAGAAACCTCCATATTGGTTCCC
ATAGTGCATGGACCCATTTACATCCCTACTAGAAGTGTCTAAGTTAGAAC
CCTACCTAGCCATAATGATAAGAGACAAGCAGTATACAGAACAAGTACAA
GCATCACATGATACATGAGGGGGATTCATGCTATGTAGAAATCATAGCAG
TGAATGATGAAAGGATGAACCTAGGTTAAAGAAAAAATGCGTTTTGCAAT
ACAGGAGTCACACGCCTTGTTGAATAAATGGTTAATCAAGTGACTCGACT
CTAATATGCTTCATGTTTATTGCCTCTTATA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGAACAGGGGGTGATATAAAC
GTCCACACCCAGAGCTCTTGGTGGCCCACAGCTAACAGTTCTTCAGAGTT
TCAAGCAGTGGAAGTCACCAGACATGGACAGACATGGACAGACATGGAGA
AGAATGGCACTTGGCTCTGCAATGCAGAAATCTGCCCTGTGGTTAAGAAG
GTCACCCCTGCATGGAAGTGCCAGTGAATGAGGTGGGAGGAGTAAGTAAG
CTGGAGTAAGAGTGTCTTCTTGTTTGAGATGCTTTCAGGAAGCAGGAAGT
TGAGGGATATTAGGTTGCTTCCCGGGACAGNGCTCCAAGTCAGTAGTAGT
TGTAGTATTAGNTATGAACCACTTGATAAAATAAATGAAGCTTTATGGGG
ACGCAGTGGCATTTGTGTATTCAAATGGTTTATTTGGTCATTTCCTCCAC
TGTTGTATCCCACATTTCTCCCCCCCCCCACCTCAAGACAGGGTCTCATG
TATTCATTAATCCAAAGATGGCATGGTGGCCAGGATCTGATAGCCTGAAC
TCCTGATTTCCCTGCCTCCACCTCCTCAGCGCTGATTACCGACAAATACC
TTCTCGGGTGTTCTCTACACAGTTCTAAATCATGTCCTAATCCCGTTGAC
GTAGGTATTATTCAATAATTAATTGCCTGTTATTCCCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_d20.g1 MSMg01no168_d20.g1 CHROMAT_FILE:
MSMg01no168_d20.g1 PHD_FILE: MSMg01no168_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:19 2005
         (283 letters)



>mm_chr13_10268678_10269360
          Length = 683

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggaacagggggtgatataaacgtccacacccagagctcttggtggcccacagctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggaacagggggtgatataaacgtccacacccagagctcttggtggcccacagctaac 260

                                                                       
Query: 61  agttcttcagagtttcaagcagtggaagtcaccagacatggacagacatggacagacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcttcagagtttcaagcagtggaagtcaccagacatggacagacatggacagacatg 320

                                                                       
Query: 121 gagaagaatggcacttggctctgcaatgcagaaatctgccctgtggttaagaaggtcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaagaatggcacttggctctgcaatgcagaaatctgccctgtggttaagaaggtcacc 380

                                                                       
Query: 181 cctgcatggaagtgccagtgaatgaggtgggaggagtaagtaagctggagtaagagtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcatggaagtgccagtgaatgaggtgggaggagtaagtaagctggagtaagagtgtc 440

                                                    
Query: 241 ttcttgtttgagatgctttcaggaagcaggaagttgaggga 281
           ||| ||   ||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctggaggagatgctttcaggaagcaggaagttgaggga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)