BAC Information

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BAC

Clone NameMSMg01-169M12
Chromosome13 (Build37)
Map Location 100,817,933 - 100,818,241
singlet/doubletsinglet
Overlap geneBdp1
Upstream geneLOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2
Downstream geneSerf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169M12.T7 (MSMg01no169_m12.b1)MSMg01-169M12.TJ (MSMg01no169_m12.g1)
ACCAG366545AG366546
length710731
length of high quality
(start - end)
317 (46 - 362)41 (77 - 117)
definitionCHROMAT_FILE: MSMg01no169_m12.b1 PHD_FILE: MSMg01no169_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:34 2005CHROMAT_FILE: MSMg01no169_m12.g1 PHD_FILE: MSMg01no169_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTTAACTCATTTACCTTTAGACATTTGACATGCTATTATTAAT
CCTGAATAAATTAAAGGTAGCTATTCCTTTGCATTGCATTTACAAGTATA
ATATTAACAGACTCAAGAAGGGCACCTCCTCTTGGCAGATGTGTCATAAC
AGGACTTGAACTGTCTTCTACATCATTACTACAGTCTAGCGAACTCCTGA
TTCTGTTTCAAATGACTCAAAGTGTTGTAAATACCTATTCAACCAGCTAA
ACGACTAAGAATCAAATGATAACAGGAAACTCTAAAGCTCAGAGTGGAAC
CAGAAGGCAATTTTTATTACAACCCCCCCCCCCCTGCTCTTCTGTTTCAT
ACCTGCTTCATTAGAATGACTACAGAGGGAAATTTTCCCCCTAAATTTTT
GAAACAGGGTTTCTCTGTGCAGCCCTGGCTGTCCTAGAACTTGCTCTGTA
CATCAGGCTAGTCTCAAATTCAGAGACCCATCTGCTGCTGCCTCTCTGTC
GATCTGCCTCTGCCTCCTGAGTGCTGGGACTAAAGGCATGTGCCATCACC
AAACAAAAGAAAACAAAACAAAACCAAGAATGGGGCATACTGTAGCTATA
GAATGACTACTTATCATGAGAGGCCAGGGAGTGGAAAGGAGAAAACAAGA
CAGAAGTGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGATTGAAAGTGTAGTAAGG
TTGAAAACCAAGATTAGCCATCCCACGATGATTTGAAAGTTCTCTAAAGG
ATCAAAGGATCAGGTGTTGAAATGGAATACCCATTGTACTATTTTAGGAG
TGGAAACTTTATTGTTTTCGAGGTGGGATCTATGTAAGCTGATTATAATA
AATCATTGAGGTGAAGATTCCATTGGATCCTGGTGAGTTCCTAAGATAGA
TCAAAAACAGTCCCTGTTCATATACACATGGTAAATAAAATAATTTTAGA
AAATTTTTACATAAGTTCGCACGGCCAAGACCCGGTGTAAGGAGGGTGTT
GAGATGCAGATGTTATTCCAAAAAAAAAAAAAAAAAATCTTCTCTGGGGG
CGGATTGTGTTATATCCTCCCCGGCTCCTGATGTCTAGATAATTTGTTTT
CCCCCTTTTATTCCCCCTGATATTATTATATATTACCTCCCTAGTTCTTC
CCGTCAATAATCCCCATTTTTCGCTCTGATTCCCCTTATATTTACTACGC
TCCCACGCCTATTACGCATTCTATCCCTCCTATTTTTTTATTTTCCTATA
CCCACGCGTCCTCATTTGTTATATATCTTTTATCTATATTCTCACATTAA
ACACCCCAATCTTACATTCTATTTTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_m12.b1 MSMg01no169_m12.b1 CHROMAT_FILE:
MSMg01no169_m12.b1 PHD_FILE: MSMg01no169_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:34 2005
         (317 letters)



>mm_chr13_100817729_100818445
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacttaactcatttacctttagacatttgacatgctattattaatcctgaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacttaactcatttacctttagacatttgacatgctattattaatcctgaataa 264

                                                                       
Query: 65  attaaaggtagctattcctttgcattgcatttacaagtataatattaacagactcaagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaaggtagctattcctttgcattgcatttacaagtataatattaacagactcaagaa 324

                                                                       
Query: 125 gggcacctcctcttggcagatgtgtcataacaggacttgaactgtcttctacatcattac 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gggcacctcctcttggcagatgtgttataacaggacttgaactgtcttctacatcattac 384

                                                                       
Query: 185 tacagtctagcgaactcctgattctgtttcaaatgactcaaagtgttgtaaatacctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacagtctagcgaactcctgattctgtttcaaatgactcaaagtgttgtaaatacctatt 444

                                                                       
Query: 245 caaccagctaaacgactaagaatcaaatgataacaggaaactctaaagctcagagtggaa 304
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 445 caaccagctaaacgactaagaatcaaatgagaacaggaaactctaaagctcagagtggga 504

                    
Query: 305 ccagaaggc 313
           |||||||||
Sbjct: 505 ccagaaggc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)