Query= MSMg01no172_c10.b1 MSMg01no172_c10.b1 CHROMAT_FILE:
MSMg01no172_c10.b1 PHD_FILE: MSMg01no172_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:33 2005
(279 letters)
>mm_chr13_48739165_48739843
Length = 679
Score = 513 bits (265), Expect = e-150
Identities = 271/273 (99%)
Strand = Plus / Minus
Query: 5 gaattctgtggcaactcagagtagcctgtctccacactactccatcattttagctaccag 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 477 gaattctgtggcaactcagagtagcctgtctccatactactccatcattttagctaccag 418
Query: 65 cagccctccagtcccgttccttccaagtgcctgaccacccagcctactatgagattttta 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagccctccagtccggttccttccaagtgcctgaccacccagcctactatgagattttta 358
Query: 125 tggctgtcttttacggtcagttagaatgggggctatagtgctgtagctattcacttatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tggctgtcttttacggtcagttagaatgggggctatagtgctgtagctattcacttatga 298
Query: 185 acagtaaagccaaacaggctctaattctccctcggtaactcaattgtaaggagcagtaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acagtaaagccaaacaggctctaattctccctcggtaactcaattgtaaggagcagtaat 238
Query: 245 gaaagacccaaaggcttatactgagggggagaa 277
|||||||||||||||||||||||||||||||||
Sbjct: 237 gaaagacccaaaggcttatactgagggggagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_c10.g1 MSMg01no172_c10.g1 CHROMAT_FILE:
MSMg01no172_c10.g1 PHD_FILE: MSMg01no172_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:33 2005
(285 letters)
>mm_chr13_48576420_48577106
Length = 687
Score = 520 bits (269), Expect = e-152
Identities = 282/287 (98%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 1 atcagtggatctttctggttgtgaacttgggggctgttttatctgtcccc--cttattga 58
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 201 atcagtggatctttctggttgtgaacttgggggctgttttatcagtctctgtcttattga 260
Query: 59 tcatcatcattctgctcaggggtttttgcatcttcctaagtcaattgtgggtagaattgt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcatcattctgctcaggggtttttgcatcttcctaagtcaattgtgggtagaattgt 320
Query: 119 ctaggaatatatcgatttctcctaagttttcaaattcattagagtatgatgttggaaaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggaatatatcgatttctcctaagttttcaaattcattagagtatgatgttggaaaga 380
Query: 179 atcctactgatctgggtttcagtgttacctgctataagatcactttttggccactaagtt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctactgatctgggtttcagtgttacctgctataagatcactttttggccactaagtt 440
Query: 239 gattagtttattaatgtccctttcctttttttttttactagttttgt 285
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattagtttattaatgtccctttcctttttttttttactagttttgt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 687
Length adjustment: 9
Effective length of query: 276
Effective length of database: 678
Effective search space: 187128
Effective search space used: 187128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
