BAC Information

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BAC

Clone NameMSMg01-172E22
Chromosome13 (Build37)
Map Location 109,500,846 - 109,501,159
singlet/doubletsinglet
Overlap genePde4d
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144
Downstream geneLOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172E22.T7 (MSMg01no172_e22.b1)MSMg01-172E22.TJ (MSMg01no172_e22.g1)
ACCAG368262AG368263
length740785
length of high quality
(start - end)		323 (37 - 359)---
definitionCHROMAT_FILE: MSMg01no172_e22.b1 PHD_FILE: MSMg01no172_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:44 2005CHROMAT_FILE: MSMg01no172_e22.g1 PHD_FILE: MSMg01no172_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
CTTAAAACTGACTCACTCCTTTGTCAGATGTACTTTGCAAATCTTGCAAC
TCCCTCTGTTGCTTGCTTACTCATTAGTTTAGTCATGCCTATTAATGAGC
AATCTAATTTCTTAGCCTATATAATTATTTTCAATATCCTGTTCAAAACA
TCTTGGCCTATCACTAATTTAAATGAGTGTGTGTTCCACATTTTCTTCAA
GTCATATTTTAATTTTTAATTGAGCTTCTAGTGTGAATTAATTTTCCCTT
GTGATATGAACTTGGAGGTGAAGATTCAATTTTTCCATATGTATATTAAC
TTACTTTATTATCACCTCCCAACTCAGCTTTCCATTACTTCATTTGATTA
CTTTGCCACCCTACAAAATTAAATTACTATATAATGTGTATATATTTCTG
GACTCTGTTTCCTTTACCCATTTGTCTATTCATATGCCAAAAATTACCTG
CCAGTCTTTCCCCAGATGTTATAAGCAAAAATCTCTCTAGACACCGCCTA
ATGTTCATATGGTCAAAACTGTCCCCATTTGAGAAGCACTAAGTTAAATT
GACCTTGGTCAGGCATAGACACAAAAAATTCTAACTTCACTAGAGAGAGA
GATGTTTAGGGTGGGGTGGNNTCCTGANATNAGTTNTGTTTCTTTACNTG
TCTNCTACTTAATTAACCTATTTAGCCCTTCTCGATTATG

CAAAAAAAAACCCCNNNNNNNNNNNNNNNNNCCTCCATGAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTG
GTTTTCTGAATCTACTTTTTTGAGTTCTTCTATATATTGAATATACCCTC
TATTGNATTTAGAATGNAAAGATCTTTTCCCAAACNNGGGGGTTGCCTTT
TTTGCCTAATGACCATGAACAATGCCCTTTCAACACAAAATCCGTTGCGT
GNNNCCCGAATTTCTCCCTCCGGCGCGGGTGGTTCAAANNNTCCCTTTTT
TTTACCCCAAACTTAAAGAGAATTTTTGCCCTTCGTTTTTTGGCCCCCCC
CCCCCCGNNTCAGGTGAGGGTATCCTTTCTACCCACCCTTTTAAAAAAAA
AAAAATTTTTGTGCGGTGCCNNNNNAAATCAGGNNNNNNNNNNNNNNNNN
NNNGGGTTCACCNNNNNNNNNNNNNNNNNNGGGGGGTTTTTTTTGGTTTC
ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNNNNNNNNNNNNNNNNNTCCTTANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNN
GGGGGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGTGTGTT
TTCCCTTNNNNNNNNNNNNTNGGTGTTGTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_e22.b1 MSMg01no172_e22.b1 CHROMAT_FILE:
MSMg01no172_e22.b1 PHD_FILE: MSMg01no172_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:44 2005
         (323 letters)



>mm_chr13_109500642_109501364
          Length = 723

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttacttaaaactgactcactcctttgtcagatgtactttgcaaatcttgcaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattctttacttaaaactgactcactcctttgtcagatgtactttgcaaatcttgcaac 459

                                                                       
Query: 65  tccctctgttgcttgcttactcattagtttagtcatgcctattaatgagcaatctaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tccctctgttgcttgcttactcattagtttagtcatgcctattaatgagcaatctaattt 399

                                                                       
Query: 125 cttagcctatataattattttcaatatcctgttcaaaacatcttggcctatcactaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cttagcctatataattattttcaatatcctgttcaaaacatcttggcctatcactaattt 339

                                                                       
Query: 185 aaatgagtgtgtgttccacattttcttcaagtcatattttaatttttaattgagcttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaatgagtgtgtgttccacattttcttcaagtcatattttaatttttaattgagcttcta 279

                                                                       
Query: 245 gtgtgaattaattttcccttgtgatatgaacttggaggtgaagattcaatttttccatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtgtgaattaattttcccttgtgatatgaacttggaggtgaagattcaatttttccatat 219

                         
Query: 305 gtatattaacttac 318
           ||||||||||||||
Sbjct: 218 gtatattaacttac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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