BAC Information

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BAC

Clone NameMSMg01-172K15
Chromosome13 (Build37)
Map Location 95,430,530 - 95,430,820
singlet/doubletsinglet
Overlap genenone
Upstream geneBhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
Downstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172K15.T7 (MSMg01no172_k15.b1)MSMg01-172K15.TJ (MSMg01no172_k15.g1)
ACCAG368505AG368506
length760737
length of high quality
(start - end)
275 (46 - 320)291 (67 - 357)
definitionCHROMAT_FILE: MSMg01no172_k15.b1 PHD_FILE: MSMg01no172_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:10 2005CHROMAT_FILE: MSMg01no172_k15.g1 PHD_FILE: MSMg01no172_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGACTATGAAGATAGCTCTACAGTGGATACTTAAAGGAGTACTT
TAAACTGAAGAGAAAGATAAACACTACCAAGAGGCCACAGGAGAAAAATA
AGCAGTGTCAGGCTAGTTAATCAAACAAGGAAAAAGAAAACAGCCCAAAT
AAACGAATGACAGAAATGAATACATACTTTCCTAAGCTAACTCTGAATAT
TAATGGCCTCAGTTTCCTCAATCAAAAGACATAGATGAATTTTCCATCAT
CTTTCTGCACCATCACGATTTTTCACATGAGAGTTCTTCTCAACAGTCTC
AAGAGTATTCAGTGNNTTGCCCAGAGCATTCCTCTTCATTTTCTCATTTG
AAGATGNTACAAAGTCATCATGAAAAAAAAAAATGTACTGATGAGGGCGT
GGTTACATTGCCGAATTTGAAATCATGGATGATTATTGAACTGGGAAAGT
TACTGCTAACTTTATCTGCCTGACGACCCAGTGTGAAGCGAACCGCCACT
ATTCTTTGATATGCTAAATATTTTTGTCTCCCCTTCACACCATTTTCTTT
TCAATTGACCCCGTTTAATCTTATTTTGTTCCCCCCCCCCTCTTTATCCA
ATACTTCCACTCCCCTCCCTCTGTCTCCTATATTATTCATTCTTCCCCCC
CCCCTTTCCCTTATTTCCTCTTTCCCCCGCTTTACTTCCTATCTTTTCTT
CCACTCCTCC
GTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAACACACCACAGCCAAGCTGTTCCTAAAGACT
AATTTGACATTTTATGAACCATCACACACAGTTTGAAGCCATGATCAAGG
CACCTGGAATCATAATATTCTTTTGGTGGCAAATGTCATATTACGTTTTT
AGGGCATTACGTCAATTTGGTATTTCACGTATTATTAATAATGCCTCATT
ACATAGAATTATTACTAAACTGGCAATTAAGTGGATGTGAAGGACCCATA
TGCTGCACTGCTCCTAACATTTCAATTACAAACTTCACGTCAGATGTCTT
CCAGTATATTTTTTTACGCCCCCCCCCCACCTGCTGGTCGGAACCACACC
GATAAATTGTTTTGCAGTGCAAGCTATTGGCATGAAGTCATTTTGTACCA
TTTTCCTGGTTTTAGGGAACTGAGGAATCTCTGCCTGTGGAGCAGCATAG
CACTGGCGAATCCTGCCCTCTACTCTTGCTATAGGAAGCCTTAGGCGCCA
CCTAGGCTTCTTGGTTGAGTTTTCTAATCCCCCCTTTGCTCCGAATAATG
ACACAGAGACCTTTGTATTTATTATCAATCTTCAGGCATGATACCTGGTT
ATATTCTGAGCTATTCTTACTGGGCTATGCTGTCCTGAACCACTTCCCAG
CCATATGGCCTGTTATCTGACGCCTTGGTCCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_k15.g1 MSMg01no172_k15.g1 CHROMAT_FILE:
MSMg01no172_k15.g1 PHD_FILE: MSMg01no172_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:11 2005
         (291 letters)



>mm_chr13_95430330_95431020
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacacaccacagccaagctgttcctaaagactaatttgacattttatgaaccatcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 aaaacacaccacagccaagctgttcctaaagactaatttgacattttaggaactatcaca 260

                                                                       
Query: 61  cacagtttgaagccatgatcaaggcacctggaatcataatattcttttggtggcaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtttgaagccatgatcaaggcacctggaatcataatattcttttggtggcaaatgt 320

                                                                       
Query: 121 catattacgtttttagggcattacgtcaatttggtatttcacgtattattaataatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catattacgtttttagggcattacgtcaatttggtatttcacgtattattaataatgcct 380

                                                                       
Query: 181 cattacatagaattattactaaactggcaattaagtggatgtgaaggacccatatgctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattacatagaattattactaaactggcaattaagtggatgtgaaggacccatatgctgc 440

                                                              
Query: 241 actgctcctaacatttcaattacaaacttcacgtcagatgtcttccagtat 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgctcctaacatttcaattacaaacttcacgtcagatgtcttccagtat 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)