Query= MSMg01no173_a03.b1 MSMg01no173_a03.b1 CHROMAT_FILE:
MSMg01no173_a03.b1 PHD_FILE: MSMg01no173_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:35 2005
(316 letters)
>mm_chr13_38110873_38111588
Length = 716
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%)
Strand = Plus / Plus
Query: 5 gaattccagaggccagtgaagaagttttcttcagaggttggagctccaggttttctttac 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaggccagcggagaagttttcttcagaggttggagctccaggttttctttac 264
Query: 65 aagaagagcgattcaggaacaaattacaatgtgtcccctttgtctcctacatgtgcacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaagagcgattcaggaacaaattacaatgtgtcccctttgtctcctacatgtgcacaa 324
Query: 125 ttcggatttatcaccataaagtcaaaggactcaagttagtgtttaaacaaaacactggtg 184
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ttcggatttatcatcataaagtcaaaggacccaagttagtgtttaaacaaaacactggtg 384
Query: 185 aaacactatcttaaagctctgagcaatggttctgaggcattttcccatgggataccttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacactatcttaaagctctgagcaatggttctgaggcattttcccatgggataccttta 444
Query: 245 taatcttaaaatttattgagaaacacaaagcaaactttaaaaaaaaaaccactgaggacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taatcttaaaatttattgagaaacacaaagcaaactttaaaaaaaaaaccactgaggacc 504
Query: 305 agattagttata 316
||||||||||||
Sbjct: 505 agattagttata 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_a03.g1 MSMg01no173_a03.g1 CHROMAT_FILE:
MSMg01no173_a03.g1 PHD_FILE: MSMg01no173_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:35 2005
(595 letters)
>mm_chr13_38250285_38251278
Length = 994
Score = 919 bits (475), Expect = 0.0
Identities = 536/579 (92%), Gaps = 40/579 (6%)
Strand = Plus / Minus
Query: 22 agaatggctctaagcttctgtataaggctcccttcatcagtgggtaaagggaaaaagcgt 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 agaatggctctaagcttctgtataaggctcccttcatcagtgggtaaagggaaaaagcgt 935
Query: 82 tccggagttaaatcccaaagcagatcacacagtcatctttgtgagcag----cagccagc 137
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 934 tccggagttaaatcccaaagcagatcacacagtcatctttgtgagcagcagccagccagc 875
Query: 138 cagccagccgcactttacctcagcatgctcaaacagcattcctctcaaagaaagagagaa 197
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cagccagccgcactttacctcagcatgctcaaacagcattcctctc-------------- 829
Query: 198 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaatcccaa 257
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 828 ------------------aaagaaagaaagaaagaaagaaagaaa-aaaaaaaatcccaa 788
Query: 258 gatgagctgtcttaaagcacttgctgaacatctgctgacagaatagtatagaaaggaaat 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gatgagctgtcttaaagcacttgctgaacatctgctgacagaatagtatagaaaggaaat 728
Query: 318 tttgatgccaggcctgcaacattatgaggtaaaaatgctttgttttacaaaactgcataa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttgatgccaggcctgcaacattatgaggtaaaaatgctttgttttacaaaactgcataa 668
Query: 378 taacctttactgctcactagcccccatgccatctttctgcatttctttctgtgtgcacac 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 taacctttactgctcactagcccccatgccatctttctgcatttctttctgtgtgcacac 608
Query: 438 attctcttccatgggtcacatcttcccgtcctctcttttcatctctctcccttcttcctt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 attctcttccatgggtcacatcttcccgtcctctcttttcatctctctcccttcttcctt 548
Query: 498 cgggctgtttggagtcatgtatgtgtgcccaaaatgaa-gatatatgtctctctctattc 556
||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||
Sbjct: 547 cgggctgtttggagtcatgtatgcgtgcccaaaatgaagga-atatgtctctctgtattc 489
Query: 557 aggctcattaaacaatgcctcacacccccacccctcaaa 595
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 aggctcattaaacaatgcctcacacccc-acccctcaaa 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
