BAC Information

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BAC

Clone NameMSMg01-173P13
Chromosome13 (Build37)
Map Location 46,743,011 - 46,743,325
singlet/doubletsinglet
Overlap geneCap2
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
Downstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173P13.T7 (MSMg01no173_p13.b1)MSMg01-173P13.TJ (MSMg01no173_p13.g1)
ACCAG369417AG369418
length717729
length of high quality
(start - end)
319 (46 - 364)350 (380 - 729)
definitionCHROMAT_FILE: MSMg01no173_p13.b1 PHD_FILE: MSMg01no173_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:44 2005CHROMAT_FILE: MSMg01no173_p13.g1 PHD_FILE: MSMg01no173_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTGGCGCTTCCTTTACATCCTCCCCCCAGTGGAGCAGTCTCTG
GAGGAACCACATTAGATGTCCACGCGTGTCAGTGTTGAGTAAGATTGAGA
AATCTCCTTTTTGAGATTCTGAAGTACAGGAGATCTGCTCATCGTTATTA
CATGGAAACTAACACATGGAGAATTCTAAGTCTAACTGGGCCGAGCAGGG
CAGGAAGAGGCAGCAAATGAGACTCAGCAAGTCGCTTTCAAGAGAATGGC
CATATCAGCTTGGCAGGTTGCTTACCAGCTCTCTACAGGTTGCAGTCAGC
AGACAGGTTGTGTTTATTATCCCCCCCCCCCCAAGGTAGAGGCAGAAGGA
TCAGAGGTTTGAGATCAGTGTCGGTCAAGTACAAAATGAGTTCAAAGCTA
GCCTGGGTACTTGAGGTCTGTCTCAAAAAGCAAGCCTGGTTCTTCATAAA
TACCAATGATAGGATGATCCCATCGTGAAGTCACAGACCATGTCTGTCCA
CCTGTGACTCTGCCCTCTCTATGATGCAGATTGGGATCTGATACAATTTC
TTTCGCCCATCGCATGACACCCATGATCCTTCAACGTGTCTGCAGGAGTG
TACCATGTAATTAACTGTCTTTCTCAACTTCTTCCAGAGAGAATTCCCCA
TTCCCGAGCAGTTCAAG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTAGACAGAGA
AACCCTGTCTCGAAAATTTACCCCAAATAAAAAAGGAGGAAGCATCCTGA
TCAGTGGTTCGACATTTATTTGATGTACATGTACCCCGGAACCAGAGCAT
AAAATAAGACACTTGTAAAGCTATTGTTCAAGGGCTGAGTATGTGTCAAA
GCTCTAGCTTTAGATAATAATATTAAAGGAGAATGCCTCCCCCACCAAAA
GAAATGCTAAGCTGGGTGATGGTGACGCACACCTTTAATTCCAGCACTTG
GGAGGCAGAGGTAGGCAGATCTCTGTGAGTCTGAGACCAACCTGGTCTAC
AGAGTGAGTTCCAGAAGAGCCAGGGCTACACAGAGAACAGAGAAACCCTG
TCTTGAGAAAGACCAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGGAAAAG
AAATACTAAATGAGATTCAGTTAAGCAGTGTCCCAAATGTGGAAAACTTT
ACAGGAAAAATGTCACCAAAGAGAAGCAACTAACATAGAGTCTAGGAAAT
AAACTTTAAAAAGCAAGAACAGGGCTGGAGAGATGGCTCAGTGGTTAAGA
GCACTGACTGATATTCTAGATGGTCTGAGTTCAATTCCCAGCAACCACAT
GGTGGCTCATAACCATCTATAATGGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_p13.b1 MSMg01no173_p13.b1 CHROMAT_FILE:
MSMg01no173_p13.b1 PHD_FILE: MSMg01no173_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:44 2005
         (319 letters)



>mm_chr13_46742808_46743526
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctggcgcttcctttacatcctccccccagtggagcagtctctggaggaacc 63
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 204 ggaattcatctggcgcttcctttacatcctcccccaagtggagcagtttctggaggaacc 263

                                                                       
Query: 64  acattagatgtccacgcgtgtcagtgttgagtaagattgagaaatctcctttttgagatt 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattagatgtccatgcgtgtcagtgttgagtaagattgagaaatctcctttttgagatt 323

                                                                       
Query: 124 ctgaagtacaggagatctgctcatcgttattacatggaaactaacacatggagaattcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgaagtacaggagatctgctcatcgttattacatggaaactaacacatggagaattcta 383

                                                                       
Query: 184 agtctaactgggccgagcagggcaggaagaggcagcaaatgagactcagcaagtcgcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtctaactgggccgagcagggcaggaagaggcagcaaatgagactcagcaagtcgcttt 443

                                                                       
Query: 244 caagagaatggccatatcagcttggcaggttgcttaccagctctctacaggttgcagtca 303
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagagaatggccacatcagcttggcaggttgcttaccagctctctacaggttgcagtca 503

                          
Query: 304 gcagacaggttgtgt 318
           |||||||||||||||
Sbjct: 504 gcagacaggttgtgt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)