BAC Information

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BAC

Clone NameMSMg01-174C06
Chromosome13 (Build37)
Map Location 116,123,567 - 116,123,738
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174C06.T7 (MSMg01no174_c06.b1)MSMg01-174C06.TJ (MSMg01no174_c06.g1)
ACCAG369529AG369530
length802783
length of high quality
(start - end)
176 (99 - 274)199 (127 - 325)
definitionCHROMAT_FILE: MSMg01no174_c06.b1 PHD_FILE: MSMg01no174_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:56 2005CHROMAT_FILE: MSMg01no174_c06.g1 PHD_FILE: MSMg01no174_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTTTTTTTCTTTTTTTGTTCTCGCTTAGGGCCCAAACTANNNNNNNN
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGCTGGGTTTCCTTTCTCCCCCAAATCTTCCAGGTAGGCAG
AGCAGGCTGCTCCCATCTTGGATTGTTTCCTCTTTGAAACTTCTAATATT
GTTTCTCTCTATCCATCAGCATTGCAGAATCCTCTCCAGGGGTGTGAGTT
TACATCTTATTGTCCTGTGCCTGGCAGTAGACTCCTCAGGTGGTCAACAA
GGATGGGTGTGGAGAGAGTCTGACAGCTGAGTTAATTAATAGATGGGGGG
CCTAGAGCCCTGTCAATATGTCAGTGTCTATATAGGGTACTGCGTGCAAA
AGCGTACAAAGACATTCTATTTTTGCCCAAACACTTTTGCTCCTTATATT
ACCTTGACCTTACCTTCCTGTACTCCATCTCATTAATAACTAATCTGTAT
GCGTCCACTTCCAGTTCCTATTGAACGCTCCCTCTTCTTATTTCCCAAGT
GTTCAATTAACATCGTTTATGGAGACCGCTTTATGTATTCCTGATTTTAC
CTTCTTTCCATCTTTGCATATCACTCCTTATGCATTCTTTTTTACCTTCC
GACTTTCTCCTTTTTCCCCCCATATTTTCACCCTATTCCCCCGTATTTAT
TACCCCCCTTTTTCTCCCTGTATTATTTTTTTTTACCAATACATTTTTTT
CCCCCTTATTTTCTTTTTGTCCCACTTTTTTTTTCCCCCCTTTTTTCTTT
TT
CCCCCTTTTNCNCCNNTTNCTTTTCTTTTTTTCACTTTTTNNNNNNNTTT
TCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTAAAGAATTATGGGAATGAA
TGAACGTGACACACAGTATCTTACTAGCCCTGGAAACTTCAGCTTGGGAG
AAAAGGATCACGCAAGACACGGGGCCACCTAAGGGTTCTAGTCTAGACCC
ATGTGACCAGTCCTGTGTGGGAGGCAGGCTTAGTAGAATCAGAGTGTGAC
ATGTCACCGACATGGATGTGTTTAGTACCTACAAGGTGCTTAAGTTAATA
AATGTCGTGCAAAGTGCAGTGTCAGTATATTAGAAATAAAAATCAACCAA
ATAACTGGAAGAATTGTTTCTTTTTCTCCCCATCCCCTCAATCAACATGA
ACTAAAAGTTGAAAACTCACCATAAGTAACTGAGAAAAAAAAATTTACTT
AGTACCTCTGATGATGTAAAAGCATTTTTTTTCATTTACATTATTTCAGT
ATGTGGAATCCGCGAGAAAGGGGAGCAAGTACATTAAAAATAGACTTACT
CCATTCCCTGAGGAGTTGAACTATTTGCACAGCTACAGTTCCTCAATATT
GGGCATGGTAACAAACTGTTTCCCATTTGTTTCTTTAACCCCCACTTATC
TTAAACCGCATGCCGTACATTTACACAACGTTTTTTGACAATTGTGAATC
TTCTTGTGTTTTTAAATCTTTTAACCTTGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_c06.b1 MSMg01no174_c06.b1 CHROMAT_FILE:
MSMg01no174_c06.b1 PHD_FILE: MSMg01no174_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:56 2005
         (176 letters)



>mm_chr13_116123363_116123938
          Length = 576

 Score =  302 bits (156), Expect = 9e-87
 Identities = 168/172 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgctgggtttcctttctcccccaaatcttccaggtaggcagagcaggctgctc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaattcatgctgggtttactttctcccccaaatcttccaggtaggcagagcaggctgctc 317

                                                                       
Query: 65  ccatcttggattgtttcctctttgaaacttctaatattgtttctctctatccatcagcat 124
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 316 ccatcttggattgtttgctctttgaaccttctaatattgtttctctctatccatcagcat 257

                                                               
Query: 125 tgcagaatcctctccaggggtgtgagtttacatcttattgtcctgtgcctgg 176
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 256 tgcagaatcctctccagggatgtgagtttacatcttattgtcctgtgcctgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)