BAC Information

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BAC

Clone NameMSMg01-174C07
Chromosome13 (Build37)
Map Location 85,617,988 - 85,618,276
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174C07.T7 (MSMg01no174_c07.b1)MSMg01-174C07.TJ (MSMg01no174_c07.g1)
ACCAG369531AG369532
length717739
length of high quality
(start - end)
313 (46 - 358)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no174_c07.b1 PHD_FILE: MSMg01no174_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:56 2005CHROMAT_FILE: MSMg01no174_c07.g1 PHD_FILE: MSMg01no174_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTCTGTAATATCACAAGGTTTTTTTTTTTTTTTTTTTTTTTTCA
AGGTTGCTTTCTAGTAATCTAGGAAGAGGAATCTGAACTGAGAAACTTTA
TTTTCTGTTTGCCTATGGGCAAGTCTGTAGGGCATTTTCTTAATTAATGA
TTGGAGAGGGAGGGTCCAGCACATTGTGGACAGTACCATTGCTAGATAGT
TGGTCCCACATTATATATAAAAAGAGGTTGATCAGGCCATGATGAACAGA
TATAAGGAGCAAGCCAGTAATTCTTATTCCTCCATAGTCTGGCTTTAGTT
CCTACTCTGTTCTTTTTCCTTGATCTGANTCGAGAGTTGTAAGATGGAAT
AAACCTTGTCCTTCCCAAATTGAATTTGAAATGGTATTTTTTCACAGCAA
CAGAAACTTTAACCGGGACAAAAGGGTTTCTTTTTTTTTTTTCCCTTTTT
TTATTAGGTATTTAACTCATTTACATTTCCAAGGCTATACCAAAAGTCCC
CCATATCCACCCACCCCCACTCCCCTGCCCATCTTTTCCCCCTTTTTGGC
CCGGGGGTTCCCCTGTTTTGGGGCATAAAAAGCTCGCAAGTCCAAGGGGC
CCTCTTTTTCCAGGGACGGCCGACAAGGCCATCTTTTGAAAAATATGCTG
CTAGAGACAAAAGTTTG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTTCTGAAGGGGTAACTAAGTGTG
CAGCGCGTATTCTTATTGTTTGCTCTTTGCCTACTGAAATTCTCCCCTGC
TAAAACTCTTTTCTGTTTTTTGGGTTTTTGATTTTCAACTCCATAGTATC
TGTTGTAGATCTTGCCTTCAGGCACTGTTCTAGGAATGTTGTAAGCACTG
AAAGGGATTTTCTCAGTTAGCAAAGCCCTAAATTGATATATTCAGTTTGG
TTTTGAATAAATGTTCTGAGTTCTCTTTTGTCTTAAACTAGATATTGTGG
TCTGAGACCTTGATTTTTTTTTAGCCCCCCCCCCGCACTGGAAGGACAAA
CAGTGTCCTTCCATGTGTGATAAAGCTCAGGAGATAACAACTCCATCTTC
TCTCATTTTTGTTTTCAATGTGCTTGGGAAGCACTGGGCAGTACTCCACT
GGCAATCACCTTTCTGGAAGACAAAATGAGTCTACTATTACATCATGGTT
GATAAAAGATCACACAGAAACTGCTGTACCTGGACTCTATTTTATTTTTG
CATGTTCTTAATAGAGAATGTGTGTGAATTTTTAGTAGTATTTCCGCAAT
GTTAACCACACAAACCATATGTTATTTAGCAATCCACACAAGATTGATTT
TCCAGTTAGACACCACATGACCAGATTTCTTAGGCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_c07.g1 MSMg01no174_c07.g1 CHROMAT_FILE:
MSMg01no174_c07.g1 PHD_FILE: MSMg01no174_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:56 2005
         (292 letters)



>mm_chr13_85617788_85618479
          Length = 692

 Score =  507 bits (262), Expect = e-148
 Identities = 283/292 (96%), Gaps = 6/292 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttctgaaggggtaactaagtgtgcagcgcgtattcttattg--tttgctctttgcct 58
           |||||||||||||||||||||||||||||||| |||||||||||     ||| |||||||
Sbjct: 489 cagttctgaaggggtaactaagtgtgcagcgcttattcttattgaa---gctgtttgcct 433

                                                                       
Query: 59  actgaaattctcccctgctaaaactcttttctg-ttttttgggtttttgattttcaactc 117
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 432 actgaaattctcccctgctaaaactcttttctgtttttttgggtttttgattttcaactc 373

                                                                       
Query: 118 catagtatctgttgtagatcttgccttcaggcactgttctaggaatgttgtaagcactga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 catagtatctgttgtagatcttgccttcaggcactgttctaggaatgttgtaagcactga 313

                                                                       
Query: 178 aagggattttctcagttagcaaagccctaaattgatatattcagtttggttttgaataaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagggattttctcagttagcaaagccctaaattgatatattcagtttggttttgaataaa 253

                                                               
Query: 238 tgttctgagttctcttttgtcttaaactagatattgtggtctgagaccttga 289
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 252 tgttctgagttctcttttgtcttaaacaagatattgtggtctgagaccttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)