BAC Information

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BAC

Clone NameMSMg01-174P15
Chromosome13 (Build37)
Map Location 5,202,337 - 5,202,563
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174P15.T7 (MSMg01no174_p15.b1)MSMg01-174P15.TJ (MSMg01no174_p15.g1)
ACCAG370116AG370117
length727747
length of high quality
(start - end)
230 (440 - 669)232 (126 - 357)
definitionCHROMAT_FILE: MSMg01no174_p15.b1 PHD_FILE: MSMg01no174_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:57 2005CHROMAT_FILE: MSMg01no174_p15.g1 PHD_FILE: MSMg01no174_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGG
AATTCACCAACTTTCTCCTAATATGCAATGTAGCCTGTACTGAAGATTTC
TATCTCAGTGGGATTCCCTGGCCCCTTCATGGTATTCCCTTGTCTGGGTG
AGATTGGCTACTATCCTTTGTCAACACTCTGCAGACCAGCCTTGAGCTGC
TAGCTCCATCGTTTGTAATGGTTAATTAGTTTCACTGTCTCTACCAAGCT
CCTCAGCTTCAAATATTTTCTAGGACATTGGAACACTGGTGAAAGCTTAG
CTTTGTCAGAATTCAATCTTATTTTTTATACTTATAATAAGATAATACTA
AAAGAGAGCATTTAGATTCACCCCNTAGCCTAANCCGGGGATATGGTGTG
AGTATACGGGTTATGAGAACACCAAAAAATCCAGNAGAGAGTTCCTTTTG
AAACTCTATGCCTCGTGAGTGCTTCCAGGCTTCTCAGCCTGTCAAGCAGA
CTACACTGGAGTGTGTGCAGCACTGTCTTCTACTCTTCTTGGGTGAATTT
ATTTTCTTTCGTTCTAAAGATTCTAGGTGTGCTGGGAGACTGCTAGTGTA
TGCTCTCTCTAGTTTCTTTTTGGAGGCACTCAGGGCTATGAGCTTTCCTC
TTAGGACTGCTTTCATTGCTTTCCATAAGTGTTGGCATGTTGTGGCTTCA
TTTTCATTAAACTCTAAAAAGTCTTTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGATTGGATACGCAATAGTTATCAA
TCAGGAATTACCAGGAGTCAGTCATAAAACACAGAAGTTACCAGAATCAC
AGAAGCAGAGACATTGACAGAATCGGAATTTTATTAGCTTTATAAAGTTG
ATTAATTAATTTCATAGGTTTTGCTCATTTTTTTGTTTTTTGTTTTTGGT
GTATTTTAGGTTTTATTTTATGTAAACTAATTAGTTTTCAAAATAAAGCT
ACTTTTTGGTAAAATGTGTTATATTTTTGTTGCATGTGTTTTGTATTAAA
AAAAAATTCTTTTTTTTCCCCCCCCCCCCCCCCTTAATGTTTTTTGGTTT
ATGGAAGAGATGCACCCCCCCCCAAAAATAAAAAATGTTCTCGGGGTCTG
TGCATTATCGTGCTCTGTCAATCATGAATACGTCCGGGCCTTATATGGGC
TACTCCTATTCAGATCATGAGTCCAGTTCAGCGCGGTGATGTTTGCTTAC
TGATTCCAGTGCCTTGCCTATGATCCTTCTCCTTCCAGCTTATCCTTCGA
TCTTCGTTTCTTGCTTCCTCTTTTCCCATGCTTCCTTTTTGGTGTTCCTC
CCGTTACACTACCTGCCCTCTCTTCATCTTTCCGTCGTTCTCCTCTCGCT
CCCTTCACCGTTTTCCGACCTTCGTTGCTTCCTTTACCCTTGCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_p15.g1 MSMg01no174_p15.g1 CHROMAT_FILE:
MSMg01no174_p15.g1 PHD_FILE: MSMg01no174_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:57 2005
         (232 letters)



>mm_chr13_5202134_5202765
          Length = 632

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   acacagaagttaccagaatcacagaagcagagacattgacagaatcggaattttattagc 63
           ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 430 acacagaagttaccagaatcatagaatcagagacattgacagaatcggaattttattagc 371

                                                                       
Query: 64  tttataaagttgattaattaatttcataggttttgctcatttttttgttttttgtttttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttataaagttgattaattaatttcataggttttgctcatttttttgttttttgtttttg 311

                                                                       
Query: 124 gtgtattttaggttttattttatgtaaactaattagttttcaaaataaagctactttttg 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtgtattttaggttttgttttatgtaaactaattagttttcaaaataaagctactttttg 251

                                                          
Query: 184 gtaaaatgtgttatatttttgttgcatgtgttttgtattaaaaaaaa 230
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 250 gtaaaatgtgttatatttttgttggatgtgttttgtattaaaaaaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)