BAC Information

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BAC

Clone NameMSMg01-176C19
Chromosome13 (Build37)
Map Location 14,194,321 - 14,194,847
singlet/doubletsinglet
Overlap geneArid4b
Upstream geneLOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243
Downstream geneLOC100039916, Hecw1, Mrpl32, Psma2, AW209491, EG665099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176C19.T7 (MSMg01no176_c19.b1)MSMg01-176C19.TJ (MSMg01no176_c19.g1)
ACCAG370946AG370947
length1,2271,123
length of high quality
(start - end)		542 (131 - 672)641 (125 - 765)
definitionCHROMAT_FILE: MSMg01no176_c19.b1 PHD_FILE: MSMg01no176_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:36 2005CHROMAT_FILE: MSMg01no176_c19.g1 PHD_FILE: MSMg01no176_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTCTTTTNNNAACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGGAACTGGAGTCCCTTTAAACCCCGAGCTGTCATTTG
GGTTCGAAAATGAAACCCCTGAATCTCTGTAAGAGGGATAACTACTTTTA
ACTACTGAGCTATCTGTCTAGCCCTAGTTGTCACACTTTTCATTGTCACC
CTACTGAAATCTTCGGTGTGTTGGTAGTTTTGTGAATTACTTGCATTTGT
CTATTCCATTCATCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT
TCTTTTTTGTTAAAATGATAGGAACACACAGCTTTTATTTTGAACAGTGT
AAATGTTTATTGGATACCTTTTTCATTTTCTTTTATTATATACTACCTGG
CTCAAGACCGAATGGCAATTCTGTTGCTGAGAACTAATTTAAGACCTTGA
GATAACCTCATGACTTGGTGCTCCTTATTGTGTGGTGTGAGTTAGAATTC
TCTGGAGGGCTTATTAAAGAACTAATTGTTATTTTTTTCCTTCAGTTTCC
AAATCAGGGCATAGAGTTGAGCTGAGCATTTTTATTTTTAACACATTTCT
ATGTAATACTTGTGCTTTTGGCCTGTAGAGCCTCCTCTACGAACCACTTT
GTGTTCTATAAACACAGACTCATGTAACAGTTACACGTCCTGTAATCCCA
CAACACAGGAATGCCTAATTCAGTATTTTGAAAGTGAACAAGCAGTTTAA
CTACTGTTAACTAAAGAGTACCAGGAGCTTTTATTGGAAAAATGATAGTG
AGTGTATTGTCAACTTANCAGCTAAGTTGAAAAACAAAGCATGTGAATTC
CTGTGACTCTGCCTAGCTCTCAGCCTCCCTTTTGTATGTGTCCCTTTTCT
TTCTCTTGACCTGATCAAAAATTCTCAGCCCACCTGTGGCTTTTTTAAAA
GATGAACCTCTTCCCCTTTGGGTTTATATTTTTCATCCTTTTGTCCCCAN
CCCACATCCTAATTTGATTTTTCTAGGCTTTGTATAATATATACCTATGC
TCCTCCATATTGTTATCTTTCTTCTGGGTAATATAAATCTTTTATTATGT
GTGAATTTTATTTTTTCACCACTCTTCCTCTTCAAATTCTCATCATTTTT
TTGCTATCTTTCTGTCTTTCTAACGTC

CGGTTCTTTTTTAAAACAAGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAATTCTGTTCCCCATTTTT
AAATAGGGTTATTTGCCTCTCTGGAGTCTAACTTCTTGACTCTGCATATA
TTGGATATTAGCCCTCTATTGGCTGTAGGATTGGTAAAAATCTTTTCCCG
GTCTGTTGGTTGCCATTTTGTCCTATTGGCAGTGTCCTTTGCCTTACAGA
AACTGTGCAGTTTTATGAGGTCCCATGTGTCAATTCTTGATCTGAGAGCA
TAAGTCATTGGTGTTCTGTTCAGGAACGTTTCCCCTGTGCCCATGTATTC
AAGAGTTTTCCCCACTTTCTCTTCTACTAGATTAAGTTTATCTGGTTTTA
TGTGTAGGTCCTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAG
ACTGGATCAATTTGCATTCTTCTACATGCTGACCGCCAGTTGAGCCAGCA
CCATTTGTTGAAAATGCTGTCTTTTTTCTACTGGATGGTTTTAGCTCCTT
TGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTGCTGGGTCTTCA
ATTCTATTCCATTGATCTACCTGCCTATCTCAGTACTAATACTATATACT
TTTTATCACTATTGCTCTGTAGTACAGCTTGAGGTCACAGATTGTGATTC
CCCCAGAAGTTCTTTTATTGTTAAAAATAGTTTTCAATATCCTGGATTTT
TGTTATTTATTCCAGTTGAATTTGAGAGTTGCTCTTTCTAACTCTATGAA
GAATTGAATTGTAATTTTGATGGGGATTGCCTTGAATCCATAGATTGCTT
TCCAGTAATATGGTCCTTTTTTACTATATTAATCCTGCCAATCCCTGAGC
TTGGGAGATTTTTCCCTCTTTTCAAGGCTTGTTCCAATTTCTTTTCTTCC
AAAAATTTTATATTTTTTCTTTCAAAAATTTTTCTTTTTTTTGGTGTAAA
ATCCCCCTTCAAAATCTTTTTATTTTTCTTTTTGGGGTATAATCATAGAG
GGGCTTTTTTTCTTCTCTTTATTTTTTTTTTTTCGTTTCTTTTTTTCTTT
TTATATAAATATACTCTTCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_c19.b1 MSMg01no176_c19.b1 CHROMAT_FILE:
MSMg01no176_c19.b1 PHD_FILE: MSMg01no176_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:36 2005
         (542 letters)



>mm_chr13_14194121_14195062
          Length = 942

 Score =  901 bits (466), Expect = 0.0
 Identities = 516/542 (95%), Gaps = 15/542 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagggataactacttttaactactgagctatctgtctagccctagttgtcacactttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagggataactacttttaactactgagctatctgtctagccctagttgtcacactttt 260

                                                                       
Query: 61  cattgtcaccctactgaaatcttcggtgtgttggtagttttgtgaattacttgcatttgt 120
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 261 cattgtcaccctactgaaatcttcggtgtgtttgtagttttgtgacttacttgcatttgt 320

                                                                       
Query: 121 ctattccattcatcttctcttctcttctcttctcttctcttctcttctcttctcttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattccattcatcttctcttctcttctcttctcttctcttctcttctcttctcttctct 380

                                                                       
Query: 181 tctcttctcttctcttctcttctcttctcttctcttctcttcttttttgttaaaatgata 240
           ||||||||||||||||||||||||||||               |||||||||||||||||
Sbjct: 381 tctcttctcttctcttctcttctcttct---------------tttttgttaaaatgata 425

                                                                       
Query: 241 ggaacacacagcttttattttgaacagtgtaaatgtttattggatacctttttcattttc 300
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 426 ggaacacacagcttttattttgaacagtgtaaatgtagattggatacctttttcattttc 485

                                                                       
Query: 301 ttttattatatactacctggctcaagaccgaatggcaattctgttgctgagaactaattt 360
           |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 486 ttttattatatactacatggcttaagaccgaatgggaattctgttgctgagaactaattt 545

                                                                       
Query: 361 aagaccttgagataacctcatgacttggtgctccttattgtgtggtgtgagttagaattc 420
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 546 aagaccttgagataacctcaggacttggtgctccttagtgtgtggtgtgagttagaattc 605

                                                                       
Query: 421 tctggagggcttattaaagaactaattgttatttttttccttcagtttccaaatcagggc 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctggagggcttattaaagaagtaattgttatttttttccttcagtttccaaatcagggc 665

                                                                       
Query: 481 atagagttgagctgagcatttttatttttaacacatttctatgtaatacttgtgcttttg 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 666 atagagttgagctgagcatttttatttttaacaaatttctatgtaatacttgtgcttttg 725

             
Query: 541 gc 542
           ||
Sbjct: 726 gc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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