BAC Information

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BAC

Clone NameMSMg01-177E11
Chromosome13 (Build37)
Map Location 21,812,191 - 21,812,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h
Downstream geneHist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177E11.T7 (MSMg01no177_e11.b1)MSMg01-177E11.TJ (MSMg01no177_e11.g1)
ACCAG371711AG371712
length721716
length of high quality
(start - end)
607 (46 - 652)206 (344 - 549)
definitionCHROMAT_FILE: MSMg01no177_e11.b1 PHD_FILE: MSMg01no177_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:49 2005CHROMAT_FILE: MSMg01no177_e11.g1 PHD_FILE: MSMg01no177_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTTTCCACCCACATGGAAGGAAGGAATGTTTGGTTCCCACAAA
TTGTTCTCTGACTTTCATACGCATACCCTACCCTTACAATAGATGTAGCT
AATAATAGATTTTTTTTTAAGTAAGCAATATTAGCCTAGTTGTGTTTTTG
ACTTAACCTTACTCTGTCTCTGTTTCTTACTCAGCATGGGAATAAAGTGA
AGCTGGAATTAAAAAGTAGGGAAAGGGTGATGAGCTACCCTAACCCTGAG
AAACAGAACTTCTATTTTCTGTAGTGACCCAGTATTCATATATATGATAG
GGCGGCTGTAGATAGCACCGAAATGAAATTTCACAAGACAGGTATAGAGT
AATTTATACCCGCAAATACCATCGCTGCTGTTTGAGGCCGTGGGAAATGC
TGAGTTTGAGAAATCCAAAGTCCATGATAGGTTGCTGTTTCATGTGGGTA
TATACTTAAATAAAAATTTAGAAAACATTGTTGTTAGCTTTATTTTCCTG
TTATCAATCTTTGTAGTTAGCTGTTGTACCTTGCTGTTATGTTAGCGACT
CATAAGCTGTTAACATTTTGCACGTGTGCCCTACATCTCTAATTCTAGTG
CTCAGGACACAGAATCAGGCAAATCTCTGAATTCCAGGCCAGCAGTTCTA
TACAGTGAGAACCCCAAGAGG
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGATGGATTTTCTTATATTAAACC
ATCCCTGCATCCCTGGAATAAAAACTACTTGGTCAGGATGGATGATTGCT
TTAATGTGTTCTTGGATTCGGATAGCGAGAATTTTATTGAGGATTTTTGC
ATCGATATTCATAAGACAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT
CTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAAAATGAGTTG
GGTAGAGGACCTTTTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTGG
AATTAGGTCTTCTTCCAAGGTCTGATAGAACTCTGCACTAAACCCGCCTG
GACCTGGGCTTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTC
TTTAGGGGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACT
TTGGTACCAGGTATCTGTCTAGAAATTTGTCCATTTCATTGAGGTTTTCC
AGCTTTGATGAGTATAGCCTTTTGTAGAAGGATCTGATGGCGTTTTGGAT
TTCTTCAGGATCTATTGCTATGTCCCCCTTTTCATTTCTGACTTTGTTAA
TTAGGAATTTGGCCCAGTGCCTTCTATCGAGATTAGCTAAGCGCTCATCA
TATCCTGTTGAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_e11.b1 MSMg01no177_e11.b1 CHROMAT_FILE:
MSMg01no177_e11.b1 PHD_FILE: MSMg01no177_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:49 2005
         (607 letters)



>mm_chr13_21811826_21812832
          Length = 1007

 Score = 1006 bits (520), Expect = 0.0
 Identities = 571/596 (95%), Gaps = 16/596 (2%)
 Strand = Plus / Minus

                                                                       
Query: 24  catggaaggaaggaatgtttggttcccacaaattgttctctgactttcatacgcataccc 83
           |||| ||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 957 catgaaaggaa--aatttttggttcccacaaattgttctctgactttcatatgcataccc 900

                                                                       
Query: 84  tacccttacaatagatgtagctaataatagatttttttttaagtaagcaatattagccta 143
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 899 tacccttacaatagatgtagctaataatagatttttttttaa--aagcaatattagccta 842

                                                                       
Query: 144 gttgtgtttttgacttaac-----------ctt-actctgtctctgtttcttactcagca 191
           |||||||||||||||||||           ||| ||||||||||||||||||||||||||
Sbjct: 841 gttgtgtttttgacttaacctaacttttaacttaactctgtctctgtttcttactcagca 782

                                                                       
Query: 192 tgggaataaagtgaagctggaattaaaaagtagggaaagggtgatgagctaccctaaccc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgggaataaagtgaagctggaattaaaaagtagggaaagggtgatgagctaccctaaccc 722

                                                                       
Query: 252 tgagaaacagaacttctattttctgtagtgacccagtattcatatatatgatagggcggc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgagaaacagaacttctattttctgtagtgacccagtattcatatatatgatagggcggc 662

                                                                       
Query: 312 tgtagatagcaccgaaatgaaatttcacaagacaggtatagagtaatttatacccgcaaa 371
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 661 tgtagatagcacggaaatgaaatttcacaagacaggtatagagtaatttatacctgtaaa 602

                                                                       
Query: 372 taccatcgctgctgtttgaggccgtgggaaatgctgagtttgagaaatccaaagtccatg 431
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 601 taccatcgctgctgtttgaggctgtgggaaatgctgagtttgagaaatccaaagtccatg 542

                                                                       
Query: 432 ataggttgctgtttcatgtgggtatatacttaaataaaaatttagaaaacattgttgtta 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ataggttgctgtttcatgtgggtatatacttaaataaaaatttagaaaacattgttgtta 482

                                                                       
Query: 492 gctttattttcctgttatcaatctttgtagttagctgttgtaccttgctgttatgttagc 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctttattttcctgttatcaatctttgtagttagctgttgtaccttgctgttatgttagc 422

                                                                   
Query: 552 gactcataagctgttaacattttgcacgtgtgccctacatctctaattctagtgct 607
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 421 gactcataagctgttaacattttgcatgtgtgccccacatctctaattctagtgct 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)