BAC Information

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BAC

Clone NameMSMg01-184P07
Chromosome13 (Build37)
Map Location 51,057,627 - 51,057,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
Downstream geneSpin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184P07.T7 (MSMg01no184_p07.b1)MSMg01-184P07.TJ (MSMg01no184_p07.g1)
ACCAG377088AG377089
length731726
length of high quality
(start - end)
325 (59 - 383)447 (77 - 523)
definitionCHROMAT_FILE: MSMg01no184_p07.b1 PHD_FILE: MSMg01no184_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:32 2005CHROMAT_FILE: MSMg01no184_p07.g1 PHD_FILE: MSMg01no184_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTAAAAAGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTAGACCTAGGCCCCGAAGTGTGACCCGAAAG
AGGAAAGGTGGATAAGCAGGAGCGCATTTCATGATAACACTTTTGGTTTC
AAACAAACAAACAAACAAACAAACAAACAAACAAAAAACTGCTAAAGGAA
GAAAGAGAAGGCACAGACCCGAAGACCACATTTATCAATCCCTGGTTGGG
AAAACAGTCTTGTAAGCCTGTAAGCTCGAAAGAAATAGCTGATGGGAGAC
CGGTGACAAGCGTGAGTGTTCATGTTCACTGGTGGCCTTTGCAGATGGTG
AGTGGGACAGATGTCCATCCTTGCTCACTGCCAACCCCACAGTCATCAAT
GCAGAGAGCAGATCTGGTGTAGCAGACCCCGCACTGAACACTATTTTCTA
CAATAAGCTTATTGGGGCACAGCCCCGTGGCAAACCACGCAGTCCCTGTC
TGCTTTCATAACTGAAGCCCATAGCATCTCTCGGTCTCACGCTTGTGTTC
TCTGGCATTTCGGTGCACACACTAAACCACAGTCTCACCATGACAACGCC
ACAAGAGGGTGTCGCTGCCTTAATTGTCTCTTGGCCCCCACTGATCATCC
TTCCTGCCTTCCTTGCCGTATTCCCAATCCCTATTTTATTATCTCCCACT
CCAACATCAATATTCTTGCTATTCAATTTAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAAAGGAGGAGGAAGTGAAA
GAATATGAATAAAGTATTCTATCGAAAAACTTACAAACAAAACAAAACAA
ACAATGCTTTGGAAAGCAAAAATAAATGTACTATTACACCCAGTCAAATG
ACATTAACATAGAGTTCTCTCTGATATATAGAAAAACAACTGACTGCTGT
ATATTGAACAGCTATCCAGCTACTTTGCTTACTTCTCAGAGCTTTCCTCT
CTGCAATTTTCCTATAAGATCTGCTATTGGGATGGAAATGTGCTATCCCT
GTTCCAGCCCACTTCACACTGAAACTCCATTCCCTGGTGTGATATGGGCT
TTGGGACGTAACTGCCCCATAAGCATTGCAGTGAATCCCTTGTACATAGA
AATAGAGAAGAACCTCTATGTGCTCTGTCATCTATGTGTAGTGTATATTT
GTGAGATATGTGTATTTATGTATGNGNNTNNTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTN
NTTTTTNTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTATTTNTTTTTTTTGTGTGTTGTTTGGGGTTTTTGGTGTGT
TGGTTTTGTGTTTTGCGATGCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_p07.b1 MSMg01no184_p07.b1 CHROMAT_FILE:
MSMg01no184_p07.b1 PHD_FILE: MSMg01no184_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:32 2005
         (325 letters)



>mm_chr13_51057300_51058024
          Length = 725

 Score =  580 bits (300), Expect = e-170
 Identities = 315/322 (97%), Gaps = 7/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagacctaggccccgaagtgtgacccgaaagaggaaaggtggataagcaggag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattcttagacctaggccccgaagtgtgacccgaaagaggaaaggtggataagcaggag 584

                                                                       
Query: 65  cgcatttcatgataacacttttggtttcaaacaaacaaacaaacaaacaaacaaacaaac 124
           |||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||
Sbjct: 583 cgcatttcatgataacac-tttggttt----caaacaaacaaacaaacaaacaaacaaac 529

                                                                       
Query: 125 aaaaaactgctaaaggaagaaagagaaggcacagacccgaagaccacatttatcaatccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaaaaactgctaaaggaagaaagagaaggcacagacccgaagaccacatttatcaatccc 469

                                                                       
Query: 185 tggttgggaaaacagtcttgtaagcctgtaagctcgaa-agaaatagctgatgggagacc 243
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 468 tggttgggaaaacagtcttgtaagcctgtaagctc-aatagaaatagctgatgggagacc 410

                                                                       
Query: 244 ggtgacaagcgtgagtgttcatgttcactggtggcctttgcagatggtgagtgggacaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggtgacaagcgtgagtgttcatgttcactggtggcctttgcagatggtgagtgggacaga 350

                                 
Query: 304 tgtccatccttgctcactgcca 325
           ||||||||||||||||||||||
Sbjct: 349 tgtccatccttgctcactgcca 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)