BAC Information

Click to search

BAC

Clone NameMSMg01-185J08
Chromosome13 (Build37)
Map Location 39,951,345 - 40,058,678
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc35b3, EG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185J08.T7 (MSMg01no185_j08.b1)MSMg01-185J08.TJ (MSMg01no185_j08.g1)
ACCAG377531AG377532
length746813
length of high quality
(start - end)		607 (63 - 669)204 (132 - 335)
definitionCHROMAT_FILE: MSMg01no185_j08.b1 PHD_FILE: MSMg01no185_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:19 2005CHROMAT_FILE: MSMg01no185_j08.g1 PHD_FILE: MSMg01no185_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,058,301 - 40,058,678)(39,951,345 - 39,951,548)
sequence
NCCACACNNNNNGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCCAAGTTTACTTTGTAGAACTTGCCCTGA
GATTTCTACTCTAATTCAGTAAACTGCAATGCCTGATTTCTTTCACTATC
TCTCTTTCAACACTGGAGGCATTTCACCTGAATAAGTAACATTCTTATGA
AATCCAAAGCACAAGGTCAGCTCAACGATTGCCTAGGATATTGGGACACT
GGTGGAGGCCAGAAAGTAATGTTCAATCTAAGTTAGCTTTTGTCAAATCA
TTCCTTAGAGGCACTTATAGTAAAACAATACAAAAAAAAAGCACACTAAA
CCCGTCACCAACTATCTGGACCACATCCGTGTTATGCCACACCAAAGACT
CCAGGCAACCAGTTTCCATGAAACTTTTTGCCTCAAGACTGCAGCCAAGC
TTTTGGACTTGTCACACCCACTCCAGTGGGTGGGTGTGACAGTGGTTAAT
CTTCTTCCTCTTCGAGTCCAATGTCATTTTCTGTACTCTTTGCCCTTTAA
CTTATTTTATACCTAACTGCCCAAGCTGGTTAAAATGCCAGTTTTAGAAG
GATGGGTGTGTCGTACTCCATCCATAAATCAAAGCTCTAACTGTAGCTCT
CCCACCAAGAATGGAGAGGCTACTCTTCTCTGTACATTGAGTTGAGTTAT
TTATCTTAGGGACATTACCTTTCAACTTCTAGCTCAGCTGTTTTAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTTTCTCATTAATAGAGCAGG
TAGAGAAACACCTGCTATTGAGGATGTCGCCAAAAGGCAGAACATGATTT
TTTCTTAAATAGTGTCTGCCGCAGAGCCTGCCATGACTCTATCTATCCTG
GATAACATTTCCAGTCTTTCTGCCTGGACATGTGCTATCGGGATGCCCTG
AATAATGGCTATGATATAAATCATTTAGACACAAAACCATCCCAGCCATA
AATGTGGGTTGTTTGTTTGTTTGTTTAATGATCATAGGTTGGGTGATTTC
CAAAATAATCATGCCGATTATTTTTTTTTACCCCCCCCCCGCCCAGAGGA
AGAAAGGTTGTCGATATTTTGTCCCCCCCCTTTGTAAAAAAAAAAAAATA
AACCTTGCTCTCTTTGTCTAGAATTCGATCCCTGTTTGCTCTTTTCCTTT
ATGTCGTGTCGTGATTTTATCTTACATAAGTCAATAATATCTTTGATTTT
TTTTTATCATTTTCTTTTTTTTATGATTCTAATTCCTTTTTTTAGCACTT
TTCCATACTATCATCGCTATTTATAATATTATATAATTATTCTTTTAATA
CATTCACAATCATATCATATCCTTTTACTATATACTGTTCTTCTAATTCT
GTTTATCTTAGTATTTTGAGTCTTTTTCTTATATCTTGTTCCGTTCTCTT
CTTATATGACTNTTCCTTATCGTAACGTCTTCTCTAATCTCTATTTCTCT
ACTTTCTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_j08.b1 MSMg01no185_j08.b1 CHROMAT_FILE:
MSMg01no185_j08.b1 PHD_FILE: MSMg01no185_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:19 2005
         (607 letters)



>mm_chr13_40057672_40058678
          Length = 1007

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Minus

                                                                        
Query: 230  gtcaaatcattccttagaggcacttatagtaaaacaatacaaaaaaaaagcacactaaac 289
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1007 gtcaaatcattccttagaggcacttatagtaaaacaatacaaaaagaaagcacactaaac 948

                                                                        
Query: 290  ccgtcaccaactatctggaccacatccgtgttatgccacaccaaagactccaggcaacca 349
            |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 947  ccgtcaccaactatctggaccacatccgtgttatgggacaccaaagactccaggcaacca 888

                                                                        
Query: 350  gtttccatgaaactttttgcctcaagactgcagccaagcttttggacttgtcacacccac 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  gtttccatgaaactttttgcctcaagactgcagccaagcttttggacttgtcacacccac 828

                                                                        
Query: 410  tccagtgggtgggtgtgacagtggttaatcttcttcctcttcgagtccaatgtcattttc 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  tccagtgggtgggtgtgacagtggttaatcttcttcctcttcgagtccaatgtcattttc 768

                                                                        
Query: 470  tgtactctttgccctttaacttattttatacctaactgcccaagctggttaaaatgccag 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  tgtactctttgccctttaacttattttatacctaactgcccaagctggttaaaatgccag 708

                                                                        
Query: 530  ttttagaaggatgggtgtgtcgtactccatccataaatcaaagctctaactgtagctctc 589
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ttttagaaggatgggtgtgtcctactccatccataaatcaaagctctaactgtagctctc 648

                              
Query: 590  ccaccaagaatggagagg 607
            ||||||||||||||||||
Sbjct: 647  ccaccaagaatggagagg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_j08.g1 MSMg01no185_j08.g1 CHROMAT_FILE:
MSMg01no185_j08.g1 PHD_FILE: MSMg01no185_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:19 2005
         (204 letters)



>mm_chr13_39951145_39951748
          Length = 604

 Score =  387 bits (200), Expect = e-112
 Identities = 203/204 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaggcagaacatgattttttcttaaatagtgtctgccgcagagcctgccatgactcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggcagaacatgattttttcttaaatagtgtctgccgcagagcctgccatgactcta 260

                                                                       
Query: 61  tctatcctggataacatttccagtctttctgcctggacatgtgctatcgggatgccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctatcctggataacatttccagtctttctgcctggacatgtgctatcgggatgccctga 320

                                                                       
Query: 121 ataatggctatgatataaatcatttagacacaaaaccatcccagccataaatgtgggttg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatggccatgatataaatcatttagacacaaaaccatcccagccataaatgtgggttg 380

                                   
Query: 181 tttgtttgtttgtttaatgatcat 204
           ||||||||||||||||||||||||
Sbjct: 381 tttgtttgtttgtttaatgatcat 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |