BAC Information

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BAC

Clone NameMSMg01-185O04
Chromosome13 (Build37)
Map Location 18,711,033 - 18,711,153
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185O04.T7 (MSMg01no185_o04.b1)MSMg01-185O04.TJ (MSMg01no185_o04.g1)
ACCAG377738AG377739
length727857
length of high quality
(start - end)
315 (36 - 350)123 (93 - 215)
definitionCHROMAT_FILE: MSMg01no185_o04.b1 PHD_FILE: MSMg01no185_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:42 2005CHROMAT_FILE: MSMg01no185_o04.g1 PHD_FILE: MSMg01no185_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC
ACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTT
AGGATTGGTAAAGCTCCTTTCCCAATCTGTTGTTGGCCTTTTTGTCTTAT
TGACAGTGTCTTTTTCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCAGTGCTGTTCTATTCAGGAA
ATTTCCCCCCTGTGCCCATTTCTTCAAGGCTTTTCCCCACTTTCTCCTTT
TTATGTTCCACCCCCCCTGCTTTTATGTGGAGTTCCTTGATCTATTTACA
TTCCCCCCCAACAAAAAAATATAAGACTGCATCTATGTGCCTTCTTCTAC
ATGATAACTGTCTGTTGCGCCATGATGATTTTCTCGTGTCTGCTTTTTTC
CACACCGTGTTATTCCGTTCTGTGTTCTTTATCCTGATATCTATGATAGT
GCGCTCCTATGGTTTCTGCTTTTAATGCCTCTGAATGTGTCTGCCTCTTC
CTCTTGTGTCTCTAATAAAATAATTCATAGTCTTATCTCCTCGCTTTTCT
TCCTCTTTCTATCCTCTTCAATTATTTCTCTTTTTCCCCGCGATAAATCC
TTCATTGTCTTGTCCTTATAATCCCCA
NTTTCGATTNNNNCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTAA
GCATCCCACATTTGTAATACTTAATGTAATGCTTCCACCATATTCTGTGA
ATGCAAGATAAAAGAAAGTAAGTGCTGGGGTGGGTAGGAGGTAGCTGAGG
TAGTGTGAAGGAACCTTTACTCTATTGTCTGTCCCTGCCTCGTCCTTTGT
GCCTGATGCTTCATATTCTTTTTATTCCTCTGTTCCGAACTCCACACCGC
ATTTCGCTGTTCTCTCTTCATCATCTGCCCTGATGTTTTTTTTTTTCCTT
CTTTCTCTTTCGCCCTCCTCACACTTGTTTTTTTTTTTTTTCCCCCCCCC
CCCCCCTCTCCTTTGTTATCCTTCTTTATTCATCTTTTTGCCCGTTTGTC
CCCCCCAAAAAAAAAATAAAATTCAGTGTTGTGGTGTGCGCGTTTCTTCC
TTTTTCCTCCCTTTCTTTTCCTTCTCTTCTCCTTTTTCTTTTCTTTTCTC
ATTCACTTCGTTCAAACGCTCTATCTTAGCTCTCTTGTCCCGCTATATTA
CTCTTCACGCGATTATTTTTCTATATTCCTTCTAACTCTCTCCCTTCTTT
TTTCGTATTTCGAATTTCTCTTTATCTTTTATTCTCTTCTTCTCGCCTCT
CGTTCACTTATTTTCACTTTATGTCAATCTTATTCTTTTTTGTTTGCCAT
ATTACTCCCAATTCTATCAACCTCTCAATAACATCACCACCACATCTTAC
GACCCCTACTCCTTTAATCATCGCTCATTTATTATAAGTTGTTATATAAG
AACATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_o04.g1 MSMg01no185_o04.g1 CHROMAT_FILE:
MSMg01no185_o04.g1 PHD_FILE: MSMg01no185_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:42 2005
         (123 letters)



>mm_chr13_18710833_18711355
          Length = 523

 Score =  219 bits (113), Expect = 6e-62
 Identities = 119/121 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttaagcatcccacatttgtaatacttaatgtaatgcttccaccatattctgtgaat 60
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 acttttaagcatcccgcatttgtaatacttaatgtaatgcttccaccagattctgtgaat 262

                                                                       
Query: 61  gcaagataaaagaaagtaagtgctggggtgggtaggaggtagctgaggtagtgtgaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagataaaagaaagtaagtgctggggtgggtaggaggtagctgaggtagtgtgaagga 202

            
Query: 121 a 121
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)