BAC Information

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BAC

Clone NameMSMg01-185P13
Chromosome13 (Build37)
Map Location 42,563,340 - 42,717,046
singlet/doubletdoublet
Overlap geneHn1-ps4
Upstream geneNedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1
Downstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P13.T7 (MSMg01no185_p13.b1)MSMg01-185P13.TJ (MSMg01no185_p13.g1)
ACCAG377798AG377799
length766769
length of high quality
(start - end)		289 (142 - 430)300 (89 - 388)
definitionCHROMAT_FILE: MSMg01no185_p13.b1 PHD_FILE: MSMg01no185_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:49 2005CHROMAT_FILE: MSMg01no185_p13.g1 PHD_FILE: MSMg01no185_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,716,758 - 42,717,046)(42,563,340 - 42,563,639)
sequence
ACCCTNNCCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTCCAAAACAATGCATTTCTTATAATCTTCATG
ATACAAACAAGAGTAAGATGTGCATCAGGAATGTCACGCTAGTCAAACCA
ATGACCAGGAATCTGATCTTATGAAAGAGCACGCTGTTCTCTTGTCATGA
GTCATCATGGAAAGAGATAAAGGAAAAGAGAGCGGGGCCATGATGAAATT
GCTTTAGTGCAGTTCACAAAGTTACGTCTGTGCATCCCTCCGGTTCTATT
TTATGATATTCTTTAAGCAAATCTAACATTGCCTTACATACTGGAGTGGC
CACAGGTAGCTTTTTTGATAGGGTCCCCCTTTCTAAAATGTTTCTGTCCT
CACAACCAAAGTAGTGTGCTCATAACACCACCCCACGAGCAAGAGCCCCA
GTTAGGTTCATTTGATTATTAAAGACCATGGTAGATATGGACCCCTGGCT
ATGTGCAAAACTTCATTTTGTCTTAGATCAAGACAAGCCTTTTCATTGTC
TGTGTCAGAGGACAGGATGACATATTACTGTGATCATTGAATGCATTTAT
TCCACTTCCTTTGATATAATGAACTTGCAACTTGCATATTAACATAATGC
TGTCTGAGACTCTCTTCACTATCTGGACGACTTGTTTACAAGTGTTGACA
TCCCATCATGCCCGCTTTCCCCTTATTTCTTTCTCATATATTTCTTTTTC
GCCTTTATTATCCCTC

NNNCCCCNCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGTAGGTG
CAGCACATTTAAATGAGCCCTCCAAATGATGTATCACTGGGCTGTGGGTG
TTCAATCGGGAGTGGGCGTTGGTGGCAGTGTTGATGGACATAAAGATAGT
GTGTGTCCCAACAGGTTATAAAGCTTGAATGCATCAGAGTTTCCTCATCC
ATAGAGACAGCTTCTACCTTTCAGGATTATTGAGAAGAAGTGAACTGAAA
GAGGTTTTAAGATGCCAGCCATAAACTTTGGGCACCTCAGACTCTATGGC
CAACCCTCTGAGTAAACAAAGTCTGTTTTTTTTTTCCACTCTCGACCCAC
TGCGGCTTTGCCGTGAATACAAGACCGCTCACCCCCAAAATTCAATCTAA
CCCTTGAAATGGATCGAATGTTTATTTCCCTCCCACATTTGTGTGTTAAA
AGTTTAGCTCCTAGAGTGATGCTAGGACAAGATGAAGCTTTCAGAAGATG
GCAGAGCTCTTATAAATGATCTGGTCGCAGGGGACCTTTCATGCCTTCCT
CCATGTTACGTTCACAGGAAAAGATGGTCTTTAACCAGGTCAGTGCCTTG
ACCTTGTTTTTATTATTCCTCTTTTCCCTCTCCATCTATTTTTTTTTTCT
ACCCCTTTCCTTTTCTTTACTTTTTCTTTTTTCCTTTTTTTCTCTCTTAT
TTACCTTTTATTAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p13.b1 MSMg01no185_p13.b1 CHROMAT_FILE:
MSMg01no185_p13.b1 PHD_FILE: MSMg01no185_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:49 2005
         (289 letters)



>mm_chr13_42716558_42717246
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcaaaccaatgaccaggaatctgatcttatgaaagagcacgctgttctcttgtcatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtcaaaccaatgaccaggaatctgatcttatgaaagagcacgctgttctcttgtcatgag 430

                                                                       
Query: 61  tcatcatggaaagagataaaggaaaagagagcggggccatgatgaaattgctttagtgca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcatcatggaaagagataaagggaaagagagcggggccatgatgaaattgctttagtgca 370

                                                                       
Query: 121 gttcacaaagttacgtctgtgcatccctccggttctattttatgatattctttaagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttcacaaagttacgtctgtgcatccctccggttctattttatgatattctttaagcaaa 310

                                                                       
Query: 181 tctaacattgccttacatactggagtggccacaggtagcttttttgatagggtccccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctaacattgccttacatactggagtggccacaggtagcttttttgatagggtccccctt 250

                                                            
Query: 241 tctaaaatgtttctgtcctcacaaccaaagtagtgtgctcataacacca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tctaaaatgtttctgtcctcacaaccaaagtagtgtgctcataacacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no185_p13.g1 MSMg01no185_p13.g1 CHROMAT_FILE:
MSMg01no185_p13.g1 PHD_FILE: MSMg01no185_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:49 2005
         (300 letters)



>mm_chr13_42563140_42563839
          Length = 700

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggtaggtgcagcacatttaaatgagccctccaaatgatgtatcactgggctgtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cagaggtaggtgcagcacatttaaatgagccctccaaatgatgtagcactgggctgtggg 260

                                                                       
Query: 61  tgttcaatcgggagtgggcgttggtggcagtgttgatggacataaagatagtgtgtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcaatcgggagtgggcgttggtggcagtgttgatggacataaagatagtgtgtgtcc 320

                                                                       
Query: 121 caacaggttataaagcttgaatgcatcagagtttcctcatccatagagacagcttctacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaggttataaagcttgaatgcatcagagtttcctcatccatagagacagcttctacc 380

                                                                       
Query: 181 tttcaggattattgagaagaagtgaactgaaagaggttttaagatgccagccataaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaggattattgagaagaagtgaactgaaagaggttttaagatgccagccataaactt 440

                                                                       
Query: 241 tgggcacctcagactctatggccaaccctctgagtaaacaaagtctgttttttttttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||
Sbjct: 441 tgggcacctcagactctatggccaaccctctgagtaaacaaagtctggtttccttttcca 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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