BAC Information

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BAC

Clone NameMSMg01-186H12
Chromosome13 (Build37)
Map Location 106,331,674 - 106,331,915
singlet/doubletsinglet
Overlap genenone
Upstream geneSdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
Downstream geneEG668025, Olfr717-ps1, LOC631097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186H12.T7 (MSMg01no186_h12.b1)MSMg01-186H12.TJ (MSMg01no186_h12.g1)
ACCAG378145AG378146
length935759
length of high quality
(start - end)
94 (98 - 191)258 (77 - 334)
definitionCHROMAT_FILE: MSMg01no186_h12.b1 PHD_FILE: MSMg01no186_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:27 2005CHROMAT_FILE: MSMg01no186_h12.g1 PHD_FILE: MSMg01no186_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTTTTTTTTTTTTTCTNCTAAAAACAAAACGCGGCGGACAANNNNA
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGCATGATCAAGCTTTTTTTTCATGTGAAGAATGCCTACATA
GAGACAAAATTCTTCTTATAGAGATCTCTTTTAAACACATACATTAAAAT
AGCCATTACTCATCCCTAAGGCCTAAAAGCATATGGCCTTTCTCCTTTAC
CATGTGGACCTGCCATGTTTCTGGCAATCACATATATAAGACTACAAATT
TTGTTTATTGTAAGAATTTATGTTTTTTCTTTCTTGCCCTCATATTCCTT
TGTCTCAAATAAATAAAGTATTTTTTTTATCATTAACAGAAACCACAACA
AATAATAGACATTTTTTTATATTTTCCCCCCCCCCCCCCCACTAATTATG
TATACCATTTTTTTATTTAGTTTTCCCCACACCCTGTTAAAAAAAAAAAA
AATTCCCTCTTGTGTGCGGTTTTTTCCTATTATCTTCCCTTATCTATTCT
TATTTTTTTATATTACGACCTTTTTATTTATTTATTTATCTATATTTTTA
TTTACGCGCATATTTTACTTTTACAACATTGTATATTTTTAATATACTAT
TTAAATTATACTTTCCCACCTTTTTCCACCCCCCTTATCTTTTCCCGCCT
CACCCTATTCCACACGTTATTCCCCTGCTCATCCCTCCCCCTCTTATCTC
CCCTATTTTTTTTAGTATTGGGCTTTTTTCTTCTTTTCGGCTCATGTATT
TTTCTTTAACATAATACCTACACTTATTCTGTCCGTCCAAGATCTATTTT
TTTTATTACCCTTATTATTTCCCTATTTCTCTCCCTACTCCTTTTGCATT
ATATTATTCAGACTTTTTTTTCCCCTCTATCGCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGACTCCAGTTAAGACACAGC
AAGTAACTCTACCAGTGAAGGATGGAACATTAAGCCAGGCCTGCAAATCC
ATTAATGGGATGGCAACGGTACAAACAGAAGAGGTTGAAATGTACTATGT
ATGTATTGCTGAGGCTCTATCTCCTGTTTTGGTCTGTTGTCATCAAATCT
AGGGATGAGCATTGCTATGGCTGAGTGGGAATTAAAGGCATTGTATGTCC
TCAGTCCTAGGAGAAGTTTTTTTATGTTTATAGCCATGCGCAAGACAACC
ATTCACTTTTTTTTTTTCCCCCCCCCCCCCGAAGAAGAGAGGAATGATAG
ATTGGATTTTTTCCCCCCTTTTTTAAAAAAATCTACNTTTTTTCCGCGGG
TACCCTCATCTTCCCCTTATTGCTACTAATTATTCAAGCCATTTTATTTT
AGTTATACTTCCCCTCCCCTATACCCCCTTCTACCCCCTCCTTATCCCTT
ATATTCTCCCCTCCTCTGCCCCTCTTTAACTCATTTTTTTTTATTTCCCA
TTTCCCGATTTTTTACCATTCTGGTTTACACTCTTCTTTTCTCTTTTTTA
TCCCCACTCTGTAACACACATATTAGATTATTACGTCCCCCAATTAATAT
ACCCCCCTCATTAACCACTTGCCCCTCTCCCTTTTTTCCCAACTTTCCTT
CTTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_h12.g1 MSMg01no186_h12.g1 CHROMAT_FILE:
MSMg01no186_h12.g1 PHD_FILE: MSMg01no186_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:27 2005
         (258 letters)



>mm_chr13_106331474_106332131
          Length = 658

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagactccagttaagacacagcaagtaactctaccagtgaaggatggaacattaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagagactccagttaagacacagcaagtaactctaccagtgaaggatggaacattaagcc 383

                                                                       
Query: 61  aggcctgcaaatccattaatgggatggcaacggtacaaacagaagaggttgaaatgtact 120
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 382 aggcctgcaaatccattaatgggatggcaacggtaaaaacagaagaggctgaaatgtact 323

                                                                       
Query: 121 atgtatgtattgctgaggctctatctcctgttttggtctgttgtcatcaaatctagggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgtatgtattgctgaggctctatctcctgttttggtctgttgtcatcaaatctagggat 263

                                                                       
Query: 181 gagcattgctatggctgagtgggaattaaaggcattgtatgtcctcagtcctaggagaag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtgcattgctatggctgagtgggaattaaaggcattgtatgtcctcagtcctaggagaag 203

             
Query: 241 tt 242
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)