BAC Information

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BAC

Clone NameMSMg01-187E13
Chromosome13 (Build37)
Map Location 90,262,545 - 90,262,841
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187E13.T7 (MSMg01no187_e13.b1)MSMg01-187E13.TJ (MSMg01no187_e13.g1)
ACCAG378685AG378686
length744739
length of high quality
(start - end)
297 (61 - 357)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no187_e13.b1 PHD_FILE: MSMg01no187_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:33 2005CHROMAT_FILE: MSMg01no187_e13.g1 PHD_FILE: MSMg01no187_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXGTCCCTCTAGACCCTGCCAGAAGCTGTATCTCTGAGCTCT
TGTGACATGCCTAACTGATATTTGTGTGCTAGTCCAAAAAGCCTTTTTAG
TCCCTTGTCCCATGCTTTCTTTCTTTCCAGGTCAAGCTGGGAACTGTACA
AGGGCACTTTCTTACATTTCACCCAAGCACTTTTATAGTATCCTTAAGAC
CAGATCTCATTCCACATCAAGGAGCTGAAGGGGTTTGCAGCCCCCTTGGA
GGAGCAACAATATGAACTAACCAGTAACCCTAGAGCTCTCTGAGACGAAA
CCACCAATCAACCAATCAATCAACCAATCAATCAATCAATCAATCAATCA
ATCAATCACACCCACTTACAAACAAACAAACAAACAAACAAAACAACCCA
CATGGAGAGACTCATGGCTCTAGCTGCATATGTAGCAGAGGATGGCCTAG
TCGGTCATCAATGGGAGGAGAAGCCCTTGGTCCTGTGAATGTTCTATGCC
CCAGTATAGGGGAATACCTGGGCCAGGAAGTAGGAGTGAGTTAGTTGGCA
AGCATTCATATACCCTTTTTTCCCCCATTCCTTTTTCAATATTACCCTCC
CTTTTACCATTTTCCACCCCCTTATTCCCTATTTCATCCCCCATTCTTTA
ACATTAAACTACCTTATCCCCTTCATCTAATCACCCTCCCATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAATTCATATGGTCAAGAAA
TTATGGAATGACACCATCCCATATTTAAAGATAAAGAGAAGCATGTAATC
CCACTTAAATACCAGTATACTGTGGTACATTTAGCCACACTTATGTAAAT
TGAATTCACTTTAAACAATAATGCTTCTTCGCCTGCCCAAAAATATTTTG
CATAAAGGAAGCACAGTATGATATATATGTTAAATGAAAGTTAACCAATG
GAAAGGGATAGATATTCTTCTAATATTAGGACAAGGTTATGGTTGTATCC
CTCCAGAAAATGTTTGAGGACCCCGCTGCCTCCTGCATCGATGCATCAGA
CCAGGACAGCACCCCGCAGACCACCTGAAAATGAAGAGTCTCAGGAGAGA
TGACATCCTCATTAAGAGGAGATGTCCCAAAAGGAAGAATAAGCTGATGA
CTTGGAAAGATTCCAAGACATAACTCAACAAGCCAAAATCTTGGGGAAAT
TAGGTTGAGGGATGGAACGACCCATGCATTTCTAAAATTTAAACCCAGAA
TTGCTCCTGTCTAGAGGAAATACAGGGACAAAGAGTGGAACAGAGACTGA
AGGGAAGGTCACACAGACTGCCCAACCTGGGGTCCCATCCCACATACAGA
CATCAAAACCAGACACTATTGCTGATGACCAGAAGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_e13.b1 MSMg01no187_e13.b1 CHROMAT_FILE:
MSMg01no187_e13.b1 PHD_FILE: MSMg01no187_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:33 2005
         (297 letters)



>mm_chr13_90262435_90263131
          Length = 697

 Score =  543 bits (281), Expect = e-159
 Identities = 293/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccctctagaccctgccagaagctgtatctctgagctcttgtgacatgcctaactgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtccctctagaccctgccagaagctgtatctctgagctcttgtgacatgcctaactgata 348

                                                                       
Query: 61  tttgtgtgctagtccaaaaagcctttttagtcccttgtcccatgctttctttctttccag 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 347 tttgtgtgctagtccaaaaagtctttttagtcccttgtcccatgctttctttcttcccag 288

                                                                       
Query: 121 gtcaagctgggaactgtacaagggcactttcttacatttcacccaagcacttttatagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtcaagctgggaactgtacaagggcactttcttacatttcacccaagcacttttatagta 228

                                                                       
Query: 181 tccttaagaccagatctcattccacatcaaggagctgaaggggtttgcagcccccttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tccttaagaccagatctcattccacatcaaggagctgaaggggtttgcagcccccttgga 168

                                                                    
Query: 241 ggagcaacaatatgaactaaccagtaaccctagagctctctgagacgaaaccaccaa 297
           |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 167 ggagcaacaatatgaactaaccagtaaccctagagctccctgagactaaaccaccaa 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)