BAC Information

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BAC

Clone NameMSMg01-187G06
Chromosome13 (Build37)
Map Location 21,265,007 - 21,357,041
singlet/doubletdoublet
Overlap geneTrim27
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187G06.T7 (MSMg01no187_g06.b1)MSMg01-187G06.TJ (MSMg01no187_g06.g1)
ACCAG378755AG378756
length737810
length of high quality
(start - end)
316 (46 - 361)222 (77 - 298)
definitionCHROMAT_FILE: MSMg01no187_g06.b1 PHD_FILE: MSMg01no187_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:41 2005CHROMAT_FILE: MSMg01no187_g06.g1 PHD_FILE: MSMg01no187_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,265,007 - 21,265,317)(21,356,820 - 21,357,041)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGCGTTTATCGCCTCGGTTCCTGGCCCTTCCAGAGTGCGACGGAA
TTCAGAAATCCTGAGGATCCTTCCAAGCTCAGGTCTGGCTCAGAGCCATT
CATCCGGGTCACGAAGGAACAAGTAGCTCCAGCTGTTCCGAGATGGTGTG
CACAAGCGCCCAGTTGGTGGAGCTTGCAGGGGTGGGAAGCTAAAGAGCAG
ACTAGATTAGCAAGTAAATCTAGTTTATGAACACTGGCTGCAGTGCAAAC
CAGAGAGTGGCAGAAGCCTGATCTATGAAAAGTAACTGCACAAGTACGAA
AAAGCTGCATTATTTTTTTCCCCCCCACCCCAAACACTGGAAGGAAAAAG
TCAAGTGTGAGACGACCCCCCGCCAGTACAGAGCTCAGCTCAAATCCCAG
GTCCTTTGCTGCCACAGACTTGCAGACCTGACCATCTCCAGGCAAATGCA
GAGCTGCCCATTCTTGGAAATTGGTATCATAGTAAAACAAGACAGCTTTC
CGAAGAAAGGGTTGGGTATCAGTGTGACCCCAAAGAATCTCTAGGTTATA
CAGCATCCAGAATCAGAGTTTTCATTTCTAATCTTAAATATGAACTAGAA
CCTTGTAAAGTATGTATTCGTGAAAACATTTCTACTATATAGAACAAATA
AATACAGTACGCGATTGCAAAGTTACTCTCACTACAC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTAGAATGCAGAAGGTCCTGAG
TCTGATCACCAAGTCAGCATCTATCCCAAAGAAGAAAGAGAAAGAGGAAG
GGAGGGAAGGAAGGAGGAAGAGGAAAAAAGATGTGAACAACAGTTCCTGG
AAAGAGCCGGTGCCTTCCCACTGAACCTTCTGCAAGGCTGATTAGCGCTT
CCCCTGCAGGTGTGCATAGTAATGCTTACTTTAATGAGTACTCCTGTAGA
GAAAAGACACAAAATGCACCTTGTATTGTTTTCTTTCACCTCTGCACCTC
CCCTTCATCTATTGTTTTTTCCGCCCTACTGTTTATTGACCCGTTTGCCC
AGTATTTTTTTTGTTTTTTTCCCCCCCCCCCTTTTTATTTTCCCATACAT
TTTTCCTTCCCCCTGTTTTATATTTTTTTTTCATTTTGTTTTCCCCCGCC
CTCTTTTCCCCCCCCCTTTTTTTACCTCTTTTCCTTTTCCCTTTTTTTCT
TTTTCCCTCCCCCCCTTTCTTTACCCCCTTTTTTTTTTTTTCTTTTCATA
CCCCCCCTCTTTTTCATTTTTTTTCTCCTTTCCTTTTTACCCCCTTTTTT
TTTCCCTTTCTCTTTTTTTCCCCTCTTTTCCCCACCCTTTTTATTCTTTT
TCCCTCCTCCCTTTTTTTTCTTCCCTCCTCTGTTTATTTTCTCTCCTCTT
TTTCCCCCCCCTCTTTTATACCTATTTCTTATTTATCTTTACCTTCTCCC
CTCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_g06.b1 MSMg01no187_g06.b1 CHROMAT_FILE:
MSMg01no187_g06.b1 PHD_FILE: MSMg01no187_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:41 2005
         (316 letters)



>mm_chr13_21264804_21265519
          Length = 716

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcggcgtttatcgcctcggttcctggcccttccagagtgcgacggaattcagaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcggcgtttatcgcctcggttcctggcccttccagagtgcgacggaattcagaaa 263

                                                                       
Query: 64  tcctgaggatccttccaagctcaggtctggctcagagccattcatccgggtcacgaagga 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctgaggatccttgcaagctcaggtctggctcagagccattcatccgggtcacgaagga 323

                                                                       
Query: 124 acaagtagctccagctgttccgagatggtgtgcacaagcgcccagttggtggagcttgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaagtagctccagctgttccgagatggtgtgcacaagcgcccagttggtggagcttgca 383

                                                                       
Query: 184 ggggtgggaagctaaagagcagactagattagcaagtaaatctagtttatgaacactggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggggtgggaagctaaagagcagactagattagcaagtaaatctagtttatgaacactggc 443

                                                                       
Query: 244 tgcagtgcaaaccagagagtggcagaagcctgatctatgaaaagtaactgcacaagtacg 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 tgcagtgcaaaccagagagtggcagaagcctgagctatgaaaagtaactgcacaagtacg 503

                      
Query: 304 aaaaagctgca 314
           |||||||||||
Sbjct: 504 aaaaagctgca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no187_g06.g1 MSMg01no187_g06.g1 CHROMAT_FILE:
MSMg01no187_g06.g1 PHD_FILE: MSMg01no187_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:41 2005
         (222 letters)



>mm_chr13_21356524_21357145
          Length = 622

 Score =  368 bits (190), Expect = e-106
 Identities = 214/222 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctagaatgcagaaggtcctgagtctgatcaccaagtcagcatctatcccaaagaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||
Sbjct: 518 acctagaatgcagaaggtcctgagtctgatcaccaagtcagcatcaatgaaaaagaagaa 459

                                                                       
Query: 61  agagaaagaggaagggagggaaggaaggaggaagaggaaaaaagatgtgaacaacagttc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 458 agagaaagaggaagggagggaaggaaggaggaagaagaaaaaagatgtgaacaacagttc 399

                                                                       
Query: 121 ctggaaagagccggtgccttcccactgaaccttctgcaaggctgattagcgcttcccctg 180
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 398 ctggaaagagccggtgccttcccactgaaccttctgcagggctgattaacgcttcccctg 339

                                                     
Query: 181 caggtgtgcatagtaatgcttactttaatgagtactcctgta 222
           || |||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cacgtgtgcatagtaatgcttactttaatgagtactcctgta 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)