Query= MSMg01no187_l16.b1 MSMg01no187_l16.b1 CHROMAT_FILE:
MSMg01no187_l16.b1 PHD_FILE: MSMg01no187_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:07 2005
(313 letters)
>mm_chr13_53974281_53974995
Length = 715
Score = 559 bits (289), Expect = e-164
Identities = 305/311 (98%), Gaps = 2/311 (0%)
Strand = Plus / Plus
Query: 5 gaattccacatctgtgccctccccccaccccccagcacagccaaggtagaagtgtctggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatctgtgccctccccccaccccccagcacagccaaggtagaagtgtctggc 264
Query: 65 ttgatacatgttgttccatagtcacaaaaggagagtgaattttgagtggaagtaaataga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgatacatgttgttccatagtcacaaaaggagagtgaattttgagtggaagtaaataga 324
Query: 125 aagaaacctaaggggattaacccgtggttgtccacatgagttatgtaatccagatcatgg 184
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 325 aagaaacctaaggggattaacccgtggttgtccacatgggttatataatccagatcatgg 384
Query: 185 aaaggcactc--gatctcaaattctattggctgtaaaattacctctgttttctgaatcgc 242
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgcactcttgatctcaaattctattggctgtaaaattacctctgttttctgaatcgc 444
Query: 243 ttttgtacccttaaatctttgaagcagcaatgggctgactctcttccaggaggtgctgac 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttgtacccttgaatctttgaagcagcaatgggctgactctcttccaggaggtgctgac 504
Query: 303 agatcttacat 313
|||||||||||
Sbjct: 505 agatcttacat 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 715
Length adjustment: 9
Effective length of query: 304
Effective length of database: 706
Effective search space: 214624
Effective search space used: 214624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_l16.g1 MSMg01no187_l16.g1 CHROMAT_FILE:
MSMg01no187_l16.g1 PHD_FILE: MSMg01no187_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:08 2005
(614 letters)
>mm_chr13_54122041_54123053
Length = 1013
Score = 1079 bits (558), Expect = 0.0
Identities = 600/614 (97%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 1 aaatgggcttaagtgagttaagcaacaggctaactggcttacttaatcccacagtgtata 60
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 813 aaatgggcttaagtgagttaagcaacaggctaactggcttacgtaattgcgcagtgtata 754
Query: 61 agcacaggtcccactgcagctggaggaggacctcagcgttggtttgatggagctgcccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agcacaggtcccactgcagctggaggaggacctcagcgttggtttgatggagctgcccag 694
Query: 121 ggatcattgagcactggggtatttttctcttcgcatttcctctctgctctgccagcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggatcattgagcactggggtatttttctcttcgcatttcctctctgctctgccagcccca 634
Query: 181 tcctaaaaccacttcccttttatcgtcagctatgagaggattgccaggatctcctgggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcctaaaaccacttcccttttatcgtcagctatgagaggattgccaggatctcctgggat 574
Query: 241 gtgattcggatgtctgcttttatacatctcacaagattaaactcttgttttcctgaagct 300
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 573 gtgattcagatgtctgcttttatacatctcacaagattaaactcttgctttcctgaagct 514
Query: 301 gcctgcgaatatctacgatcccactggtgctaaatgagccatgccctcaccagcgaacca 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcctgcaaatatctacgatcccactggtgctaaatgagccatgccctcaccagcgaacca 454
Query: 361 ggggacagtgctcaggcaatgaggtggtactaactggcttcacttgaaccacctgctcca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 453 ggggacagtgctcaggcaatgaggtggtactaactggcttcacttgaaccacttgctcca 394
Query: 421 tccccagaaccgaggccgtgagaagctgagagccgagaaaaattgcaaaccgggagaaga 480
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 393 tccccagaaccgagaccgtgagaagctgagagctgagaaaaattgcaaaccgggagaaga 334
Query: 481 gggaccaagcgttagaaacaaagttgccttctgagctccaggaagaatcagtaactctcg 540
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gggaccgagcgttaggaacaaagttgccttctgagctccaggaagaatcagtaactctcg 274
Query: 541 ctgctccagtgcagatttctgagatgtacttaagtgctgttcccaccaattaccctcaag 600
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 273 ctgctccagtgcagatttctgagacgtactta-gtgctgttcccaccaattaccctcaag 215
Query: 601 tttcaaaccctctg 614
||||||||||||||
Sbjct: 214 tttcaaaccctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
