BAC Information

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BAC

Clone NameMSMg01-188D22
Chromosome13 (Build37)
Map Location 16,989,075 - 17,118,507
singlet/doubletdoublet
Overlap gene5033411D12Rik
Upstream geneLOC665157, Inhba, LOC625181, LOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188D22.T7 (MSMg01no188_d22.b1)MSMg01-188D22.TJ (MSMg01no188_d22.g1)
ACCAG379325AG379326
length746726
length of high quality
(start - end)		322 (45 - 366)628 (77 - 704)
definitionCHROMAT_FILE: MSMg01no188_d22.b1 PHD_FILE: MSMg01no188_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:50 2005CHROMAT_FILE: MSMg01no188_d22.g1 PHD_FILE: MSMg01no188_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,989,075 - 16,989,392)(17,117,926 - 17,118,507)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGAATTCAAAAATTATCTAGTAATATCTTATTTGGACATTTGCA
TTGTACAAGGTTTCTCCTTGCCCCCCAGACCCTATCTATCACTAATAATA
TTGTTTCTATGGGGAAGTATATTTAAGGTTTCACATGACAACCTTCCAAA
AAATTCTAAGAAACAAACCTATCTGTAAGTCTTCCAGCACAAATTGTTCC
CAGGCTTGCTCTCTCTGACCTAACCTGCTCTCCTATATCCAACTTCTGGG
TGGCCCAGGAAGGCTATCATTCCTCTGAGACTACAGCAGCCATAAGCAAT
GAAGAAAAGGGAATGTGTTCTAGCCCACCCCGATGGAATAGGAGAAAGGA
GAAGGCAGAATTATTCACCAGACACTGAAAACTGTGTATGTCACTGTATT
TGAAGGGTTATAGGCCATTTGTCAAAAGTGAATATGCAACTTTTAGAGAG
GAGAGGTGAATGTGGACAAGAAAGTATAGACTGGTGTGAGGTAGGCCTGG
GCATACTGTAGAGCTTATTAGAAGTTGTGAGTTAAAGGTATATTTAACTT
TCAGAAAGGTCACATCTTCTCAATTCTAAAATTCAGACAATGTTGACATC
TCTAAGAATTTGTGAAAAATAAATTACTATGCAAATGTGACCAGCAGAAT
CTCTGGTAAAGGATAGTACAAAAGAATGCTACATTCTCTGGGTTCC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACACAAATCAGAAGTTAACAC
TGTGAGAATCTTGGGCTATGTTTGCTCTCATGTATCAGTTACTGGGTGTC
ATTGAGAATAAAACATCACAAGGGTGTGGTTTCGGTTATAAAGATTGCAT
TTGGTGCGCTAGAAAGATGACTCAGTGGGCAAGGGTGCATGCTACTCTTT
CAGAGGTTGTGAGTTTGTTTCCAAGCATCCATGTTGGGCAACTCACAACA
GCTTGAAACCCCAGCTCTAGTTTGTAACTGATGTGACCTCTAAAGATGCT
ACACTCACTTTTACATACCCACAAACAGATCCTCAAACATACACATCAGT
AAAAATTAGAATAAACCTTTTCTAAAAATTACAATTTTGGTCCTACTGAG
GCACATAGTTTTAAAATTCATCATTTACTTTTAAAACCAACCAAACAGTG
TGGATAAGCCATGCTTTACTCTCATGTGTTTTAGTTGTGCAAGAAAGGAC
AAGCAGTTTACAGATGTGAGTAGATTGGGATCCTTTTCCATTGGCCTAAT
TTGTACAATGACAGAATACCTACCAAAGCTTTATAGCCTTCCCAAAGCAC
CCTTTCCTATTTCCTACAGAACCTCTTTTTTCTTTCAGCATCCTGGTGTC
CTTGCTGAAAGGATGTCCAGGCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_d22.b1 MSMg01no188_d22.b1 CHROMAT_FILE:
MSMg01no188_d22.b1 PHD_FILE: MSMg01no188_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:50 2005
         (322 letters)



>mm_chr13_16988871_16989592
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggaattcaaaaattatctagtaatatcttatttggacatttgcattgtacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggaattcaaaaattatctagtaatatcttatttggacatttgcattgtacaa 264

                                                                       
Query: 65  ggtttctccttgccccccagaccctatctatcactaataatattgtttctatggggaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtttctccttgccccccagaccctatctatcactaataatattgtttctatggggaagt 324

                                                                       
Query: 125 atatttaaggtttcacatgacaaccttccaaaaaattctaagaaacaaacctatctgtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatttaaggtttcacatgacaaccttccaaaaaattctaagaaacaaacctatctgtaa 384

                                                                       
Query: 185 gtcttccagcacaaattgttcccaggcttgctctctctgacctaacctgctctcctatat 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcttccagcacaaattgtttccaggcttgctctctctgacctaacctgctctcctatat 444

                                                                       
Query: 245 ccaacttctgggtggcccaggaaggctatcattcctctgagactacagcagccataagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaacttctgggtggcccaggaaggctatcattcctctgagactacagcagccataagca 504

                             
Query: 305 atgaagaaaagggaatgt 322
           ||||||||||||||||||
Sbjct: 505 atgaagaaaagggaatgt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_d22.g1 MSMg01no188_d22.g1 CHROMAT_FILE:
MSMg01no188_d22.g1 PHD_FILE: MSMg01no188_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:50 2005
         (628 letters)



>mm_chr13_17117482_17118509
          Length = 1028

 Score = 1094 bits (566), Expect = 0.0
 Identities = 578/582 (99%)
 Strand = Plus / Minus

                                                                        
Query: 47   tgctctcatgtatcagttactgggtgtcattgagaataaaacatcacaagggtgtggttt 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 tgctctcatgtatcagttactgggtgtcattgagaataaaacatcacaagggtgtggttt 967

                                                                        
Query: 107  cggttataaagattgcatttggtgcgctagaaagatgactcagtgggcaagggtgcatgc 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  cggttataaagattgcatttggtgcgctagaaagatgactcagtgggcaagggtgcatgc 907

                                                                        
Query: 167  tactctttcagaggttgtgagtttgtttccaagcatccatgttgggcaactcacaacagc 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  tactctttcagaggttgtgagtttgtttccaagcatccatgttgggcaactcacaacagc 847

                                                                        
Query: 227  ttgaaaccccagctctagtttgtaactgatgtgacctctaaagatgctacactcactttt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  ttgaaaccccagctctagtttgtaactgatgtgacctctaaagatgctacactcactttt 787

                                                                        
Query: 287  acatacccacaaacagatcctcaaacatacacatcagtaaaaattagaataaaccttttc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  acatacccacaaacagatcctcaaacatacacatcagtaaaaattagaataaaccttttc 727

                                                                        
Query: 347  taaaaattacaattttggtcctactgaggcacatagttttaaaattcatcatttactttt 406
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  taaaaattacacttttggtcctactgaggcacatagttttaaaattcatcatttactttt 667

                                                                        
Query: 407  aaaaccaaccaaacagtgtggataagccatgctttactctcatgtgttttagttgtgcaa 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  aaaaccaaccaaacagtgtggataagccatgctttactctcatgtgttttagttgtgcaa 607

                                                                        
Query: 467  gaaaggacaagcagtttacagatgtgagtagattgggatccttttccattggcctaattt 526
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 606  gaaaggacaagcagtttacagatgtgggtagattgggatccttttccattggcctaattt 547

                                                                        
Query: 527  gtacaatgacagaatacctaccaaagctttatagccttcccaaagcaccctttcctattt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  gtacaatgacagaatacctaccaaagctttatagccttcccaaagcaccctttcctattt 487

                                                      
Query: 587  cctacagaacctcttttttctttcagcatcctggtgtccttg 628
            ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 486  cctacagaacctcttctttctttcagcattctggtgtccttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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