Query= MSMg01no189_h21.b1 MSMg01no189_h21.b1 CHROMAT_FILE:
MSMg01no189_h21.b1 PHD_FILE: MSMg01no189_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:29 2005
(318 letters)
>mm_chr13_3853369_3854086
Length = 718
Score = 447 bits (231), Expect = e-130
Identities = 295/321 (91%), Gaps = 13/321 (4%)
Strand = Plus / Minus
Query: 5 gaattcttcaaagctgatcttgccatcaccatctgtgtccaacttggagatgagagcctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaattcttcaaagctgatcttgccatcaccatctgtgtccaacttggagatgagagcctt 294
Query: 65 caggtccttc-tctgggaggttcttgcccagctgcttcattacatctccaagttcctgga 123
||| ||| || | || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 293 cagttcc-tcatgtgagaggttcttgcccaactgcttcattacatctccaagttcctgga 235
Query: 124 cgctgatatggccatccttattcttgtcaaacc----tattgaaagctgcctg--gaact 177
|| ||||||||||||||||||||||||||| || | |||| | ||| | |||
Sbjct: 234 cgttgatatggccatccttattcttgtcaagccaaaaaa---aaag--gtctgaagtact 180
Query: 178 cagcgacctcctccttagtaaacccgtgagacatctctgtaccttacaaagcttctgaga 237
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cggccacctcctccttagtaaacccgtgagacatctctgtaccttacaaagcttctgagc 120
Query: 238 ttggtgtcaactggatgtcagtctactgctcctgcggtttctggtccagtgctcaaggct 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 119 ttggtgtcaactggatgtcagtctgctgctcctgcggtttctggtccagtgctcaaggct 60
Query: 298 actgctgggctctgaagctgt 318
|||||||||||||||||||||
Sbjct: 59 actgctgggctctgaagctgt 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_h21.g1 MSMg01no189_h21.g1 CHROMAT_FILE:
MSMg01no189_h21.g1 PHD_FILE: MSMg01no189_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:29 2005
(237 letters)
>mm_chr13_3764831_3765467
Length = 637
Score = 431 bits (223), Expect = e-125
Identities = 232/235 (98%)
Strand = Plus / Plus
Query: 1 tttttggttttgtgtcattgtccaaatattctttgcaccctccacccctaacaaggtatt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttggttttctgtcattgtccaaatattctttgcaccctccacccctaacaaggtatt 260
Query: 61 gtagttaaattagaaactggcttaaatgccaggttatttatgtgtgtgtacttacggatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagttaaattagaaactggcttaaatgccaggttatttatgtgtgtgtacttacggatg 320
Query: 121 atggcagactggctgggactattttttctgagcaagcaggaaggttccatacagcaggag 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcagactggctgggtctattttttctgagcaagcaggaaggttccatacagcaggag 380
Query: 181 gatacttgtgtgatgcaaggtgcgcagagaacagcctttatttagacattcagtt 235
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtacttgtgtgatgcaaggtgcgcagagaacagcctttatttagacattcagtt 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
