BAC Information

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BAC

Clone NameMSMg01-189N17
Chromosome13 (Build37)
Map Location 91,628,897 - 91,629,135
singlet/doubletsinglet
Overlap geneSsbp2
Upstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959, LOC666889
Downstream geneAcot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189N17.T7 (MSMg01no189_n17.b1)MSMg01-189N17.TJ (MSMg01no189_n17.g1)
ACCAG380398AG380399
length770738
length of high quality
(start - end)
---239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no189_n17.b1 PHD_FILE: MSMg01no189_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:56 2005CHROMAT_FILE: MSMg01no189_n17.g1 PHD_FILE: MSMg01no189_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
CGTTGTACTTCGAAGCCAACACTCTAATAAGAATACGTGATAACAAGGAG
CAAGAATCGTTTATTAAAGAAAGTCGGACTACACTTGTTGAAGCCGAACT
TCTCTCCGGAAAGAACGACTTTACGCTACTACCATAGCGGTACCAAATAC
CAGGCGTGAGTTACCGAATGGCGTGCCTCGCTATCTGTATAGCTAACTAC
ATGATATCCTATGAAAATGGCATCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXGACTCATCACCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAAACTTAATGAAATCAGCCTTTC
CAAAGTGATGACAGAGATTGACACGAAAAAGATGCACTAGCCTGCAGGTG
AGCAAAGCAGGCTAGCTCATGCAGACGATCCAGCAACCACCGGTCTCCAG
GCAAGGAGGGTAGGAGAAGAGAGGGAGAGAGAATCAGAGTCAGAGGCAAG
TGGATCAGGACATTAGCGAACAGTGAAGGCTTCAGCTTTGCTGAGCAAGC
TCGGAACTGAAATTGTTCTCTCTTATTTACATTTACCACAACTATGATAA
GAATATAAGTTTCTTATTACAGACACTGACTGAAATGTCAAGTTGTCAAT
ATTCAATGGAATTCCATTCCTCAAGGGATCAAAGAAAGAAAGGCACTGGT
CAAGGCCATCCCTACTGCTTAGCTACAAAGGATCCACAGGAAACCAACCT
GGGCTTCCTATACTAAGAAAAGCAGTTTAGACAACAGGAAAATATATATA
TATATATATATATATACTGTACATTATATACCATGGCTAATGTAAACTTC
TAAAGTCATTTCTACTCTAGATGCTGCTATAAACCTCCTGCAAGAAATGC
CTAGTTTCTTACAATCTAATTGATATTTAAGAACATAAAATATATAGGTT
TTGGCCAATTTCTCTTTTATTTACATTTTTATTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_n17.g1 MSMg01no189_n17.g1 CHROMAT_FILE:
MSMg01no189_n17.g1 PHD_FILE: MSMg01no189_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:56 2005
         (239 letters)



>mm_chr13_91628697_91629335
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagatgcactagcctgcaggtgagcaaagcaggctagctcatgcagacgatccagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaagatgcactagcctgcaggtgagcaaagcaggctagctcatgcagacgatccagcaa 380

                                                                       
Query: 61  ccaccggtctccaggcaaggagggtaggagaagagagggagagagaatcagagtcagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaccggtctccaggcaaggagggtaggagaagagagggagagagaatcagagtcagagg 320

                                                                       
Query: 121 caagtggatcaggacattagcgaacagtgaaggcttcagctttgctgagcaagctcggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 caagtggatcaggacattagcgaacagtgaaggcttcagctttgctgagcaagctcagaa 260

                                                                      
Query: 181 ctgaaattgttctctcttatttacatttaccacaactatgataagaatataagtttctt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgaaattgttctctcttatttacatttaccacaactatgataagaatataagtttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)