Query= MSMg01no189_p12.b1 MSMg01no189_p12.b1 CHROMAT_FILE:
MSMg01no189_p12.b1 PHD_FILE: MSMg01no189_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:04 2005
(320 letters)
>mm_chr13_89516762_89517480
Length = 719
Score = 569 bits (294), Expect = e-166
Identities = 309/314 (98%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcatttactcggaatttgtgttatgaccaagaatctttgtatatactccactc 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattctcatttactcggaatgtgtgttatgaccaagaatctttgtatatactccactc 457
Query: 64 aaaaaaagtatgttaccttattgtgggctctttgaagcaagactgcatgcaaaaaatgtt 123
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaaaaaagtatgtta-attattgtgggctctttgaagcaagactgcatgcaaaaaatgtt 398
Query: 124 tttaacatgaccatattttcttgtttctttacattgataggatataaaaaccaaaaatat 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 397 tttaacatgaccatattttcttgtttctttacattgataggatataaaaaacaaaaatat 338
Query: 184 cacctaataagctcagcaagggaaacagaaaagacaactctaagatacgttagagcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cacctaataagctcagcaagggaaacagaaaagacaactctaagatacgttagagcagca 278
Query: 244 tattacaatggcacctgtaatgcatcatttgatattattgactgactaaattaagaattt 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 277 tattacaatggcacctgtaatgcatcatttgatattattgattgactaaattaagaattt 218
Query: 304 atagcaggtgtgca 317
||||||||||||||
Sbjct: 217 atagcaggtgtgca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_p12.g1 MSMg01no189_p12.g1 CHROMAT_FILE:
MSMg01no189_p12.g1 PHD_FILE: MSMg01no189_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:04 2005
(659 letters)
>mm_chr13_89465929_89466984
Length = 1056
Score = 1197 bits (619), Expect = 0.0
Identities = 648/659 (98%), Gaps = 3/659 (0%)
Strand = Plus / Plus
Query: 1 cttctacctggaaggcaaagctctttattctgctcttctataaaatactgttgggacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctacctggaaggcaaagctctttattctgctcttctataaaatactgttgggacact 260
Query: 61 gactcttcccttgttcagtttttttttctagattttgttatggagcatcagagtcaaatg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gactcttcccttgttcagtttttt---ctagattttgttatggagcatcagagtcaaatg 317
Query: 121 tcacctgaaggtagctttgtgggacatgggttaaggttaataacgttagaccttcaactt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 318 tcacctgaaggtagctttgtgggacatgcgttaaggttaataacgttagaccttcaactt 377
Query: 181 gggttgcaacataataaagatagtggattgtctgtttattttaataaatattaaagaatt 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gggttgtaacataataaagatagtggattgtctgtttattttaataaatattaaagaatt 437
Query: 241 ttagactagactttatatagttgctcccagtttaaaaattaataatatattctcctccac 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 ttagactagactttatatagttgctcccagtttaaaaattaataatataatctcctccac 497
Query: 301 accctcattctaactttccatggattctagaaactcaatctgtagaatcatgagtgtgct 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 498 accctcattctaactttccatgtattctagaaactcaatctgtagaatcatgagtgtgct 557
Query: 361 tcttctcaaatttaataccatatatttatacctttgcattattgcattatgctataattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcttctcaaatttaataccatatatttatacctttgcattattgcattatgctataattc 617
Query: 421 atattttgtgagatattaaattgtacttatcttttctctgatatattcctgatggatttt 480
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 618 atatcttgtgagatactaaattgtacttatcttttctctgatatattcctgatgggtttt 677
Query: 481 ctgttatatatttcacatgtaagataactcttaaacagtgggattagtctttagataagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 678 ctgttatatatttcacatgtaagataactcttaaacagtgggattagtcttcagataagg 737
Query: 541 ttaagtgcattcagctgatgttttgtttgtggtgttgtttattattaattcagtataatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttaagtgcattcagctgatgttttgtttgtggtgttgtttattattaattcagtataatg 797
Query: 601 gaagcacttatattgtaccagccaatatatgtgtctttgaaagtatagagatgaaaaat 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaagcacttatattgtaccagccaatatatgtgtctttgaaagtatagagatgaaaaat 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space: 678854
Effective search space used: 678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
