BAC Information

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BAC

Clone NameMSMg01-190B01
Chromosome13 (Build37)
Map Location 25,402,145 - 25,402,438
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190B01.T7 (MSMg01no190_b01.b1)MSMg01-190B01.TJ (MSMg01no190_b01.g1)
ACCAG380534AG380535
length699737
length of high quality
(start - end)
646 (46 - 691)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no190_b01.b1 PHD_FILE: MSMg01no190_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:11 2005CHROMAT_FILE: MSMg01no190_b01.g1 PHD_FILE: MSMg01no190_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGGAATTCAGTAAGAAGGTTATCTATTCAGTAACATTCAATT
TTACTTCTCATAGAGACGGTGAAACTAATTAGGCATTACAAAGAATGGAG
CCAGAATAGCTCTGGGCTGGTCTGCAGAGTGTTTACTTGGGACAATAGCC
AGGCTTACCCAGACAAGGGAATTCACAATGACCTAGCAAATAGGTGGGTT
TACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGGC
CCAAAGAAACAGCTTAATCAAGCATTTACTAAGAACCTCTGGTGGTGGGC
TTAACAATAGACTAGCATTACACCTGGCTCCCTTCTTAGAGGCAGTGGCC
TGGTCCCTGCCTTCTTTTGTTGTATACATTCATTTTGTATTGTGTCTCTG
TAACTCAGCATATGTATCTTGCCTGGTTTCTTGTCACTCTTCTGTATAAA
AAGTTTGATGCTCAACTTGAAAAATTACACTCAGATTCTACACAATCTCT
CATGTCGCTTCTGTCTGTCATTCTCCAACTCCTTGTCCACCTGCAACTAA
AGACCCATTCTACACAGACAGGGACAAAAAAAGGGTCTGTGGTAGCTGAG
CACTAATACATCTCTTCTCTGCCTGACTGTAAATGCTGTGATCCACCAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATGACCCCTTTCTGCCCCCTGTGG
TGTCATTTCTGAGCTCTGATTCAGTAATTTAGAGCTGAGAGAGACTTAAT
AAAATCTCCAAAATGAATTCCAGGGTGGCTCTTGTGAGAGGTTTTTTTCT
TTTCTTTCTTTCTTTTTTTTTTTTCCTCTTCATATGCAGGCAGCTTGCTA
ATGGCCACACTCACTCCTTCTTCTAAGCTGCATGAGTCTAAAGCCCGAAA
GGAATCATTCCTATGGTGGGAGAAACTGCTGATGTTTCAAGATAACCAGC
TCTGTCATAAGCCTCCTGTTTTTAATTCCACCGCCCTCTGTGCAGGCAGA
CAAAAATAGGTTATATAAGGCAGGGTTAGTTTCCTAAATATTCCTGAGAT
GGTGGCTGCTGCTGCTGGATAACTTTGAATATTTGGTGCTCTGTAAAACC
ACAAGGTCTTTATTTTACTGATCATTTCATTAAAATATCCTTCTCCTCTT
AATAAAGCTGATTCATAGTATTTTCCTCCTGTGGCTTCCAAAGGAGAGGG
AGAATCCCATGTTTAGAGAAAGGGATCTCTTACTACAGAATGAATTAAAC
TGATGTAGCAAGCAGGAGCTTTTCCATGAATACTTGAGTGAACTGCTTAG
CTTTTTTGTCACCTTTATACACCCTAAAATCACCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_b01.g1 MSMg01no190_b01.g1 CHROMAT_FILE:
MSMg01no190_b01.g1 PHD_FILE: MSMg01no190_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:11 2005
         (292 letters)



>mm_chr13_25401947_25402638
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 291/294 (98%), Gaps = 2/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgacccctttctgccccctgtggtgtcatttctgagctctgattcagtaatttagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaatgacccctttctgccccctgtggtgtcatttctgagctctgattcagtaatttagag 258

                                                                       
Query: 61  ctgagagagacttaataaaatctccaaaatgaattccagggtggctcttgtgagaggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgagagagacttaataaaatctccaaaatgaattccagggtggctcttgtgagaggttt 318

                                                                       
Query: 121 ttttcttttctttctttctttttttttttt--cctcttcatatgcaggcagcttgctaat 178
           ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||
Sbjct: 319 ttttcttttctttctttcttttttttttttttcctcttcatgtgcaggcagcttgctaat 378

                                                                       
Query: 179 ggccacactcactccttcttctaagctgcatgagtctaaagcccgaaaggaatcattcct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggccacactcactccttcttctaagctgcatgagtctaaagcccgaaaggaatcattcct 438

                                                                 
Query: 239 atggtgggagaaactgctgatgtttcaagataaccagctctgtcataagcctcc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atggtgggagaaactgctgatgtttcaagataaccagctctgtcataagcctcc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)