BAC Information

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BAC

Clone NameMSMg01-190D23
Chromosome13 (Build37)
Map Location 19,750,283 - 19,750,571
singlet/doubletsinglet
Overlap geneTxndc3
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4
Downstream geneA530099J19Rik, Gpr141, LOC432730, Elmo1, LOC100040226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190D23.T7 (MSMg01no190_d23.b1)MSMg01-190D23.TJ (MSMg01no190_d23.g1)
ACCAG380658AG380659
length663728
length of high quality
(start - end)
194 (96 - 289)289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no190_d23.b1 PHD_FILE: MSMg01no190_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:26 2005CHROMAT_FILE: MSMg01no190_d23.g1 PHD_FILE: MSMg01no190_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCCAGAAGACCGCGGAANNCCGGATCTTTCAATATAATTAAT
GAAGGGTATTGTGTTTTGTCAAAGGCCTTTCACATGTCATACCCCATGTG
TTGTTTTTTTTTTTATTTGAGTTCGTTTACATTTTGGATTACATTGATGG
ATTTCCATATATTGCACCATACCTGCACTCCTGGGATGTGTTCTTGGATT
CAGTTTTTGAGAATTTTATTGATTATTTTTTCATCATCATTCATAAGAGA
AGAAGGTCTGAAATTCTCTTTCTTTGTTGGGAAGTTCTGTTTTTTTTATT
AGATAACTGNGGCTTTGTAAAATTTTGGTGACCTTAAACANATCTCATNT
TGAGGAAAGTTTGAGAAGATTGGATTAAGTGAAATTATTAAATGATAGGA
TTCTGTACTAACCATCTGGTCCTGGGCTTTTTTGTTTGGGAGACTTCAAA
TGACTTCTATTTCCTTACGGGCTATGGGTTTATTTAGATGGTTTATCTAA
TCCTGATTTAATTTTGGTACCTTTTGCCAGTCTAGAATATAACCATTTCA
TCTAGATTTTCGACGTTTGCTGACTATAAATTTTTGCACNAGGATCTGAT
GACTTTTTTTATTTTTTTTTCAGTTCCCGATCTAATGCATGTTTTTTCAT
TCCTGATCTTGCG
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGATATAGGAAATACAATT
TCAGTTTGAGATGGCTTCTTGGGAAAGCACCTATTCCTGGTGGAGTAACT
GACTATTTATTGTGGAGGACTGGTCTAATGGCAGCTTGAAGATGGCCATA
GCTTTGCAAGAAAATATGGGATGCTTGATTGGGCCCTCTCAACTTTACTT
ATTGGGAGAAATATCCACCATAACCACAATTAAATAAAAATTACCCAGAG
AAAGTTGTGATCATAGCTGCAACATCTTTAATTGATCATAGGAATTTTGA
AATGTGGATGAGAAAAATCATTATCTTCATCCCCCCCCCTGTACAGAGTA
CTTTAATCTTACCAAGTGAGGTCACATAGCTGGCCAGAAATTTTCACTCT
TGGGGTCCCTGTTCTTTATTGTTCTCCCTTGGTCATATTCACTAACAATG
GGATTTAATTGTTCACCTCATTTCTTCCTAATATCTGCTACCTCTCCGAA
AGGGCATAGGATATCCAGTCAGCTGCTAATTACTTCCTTTTGTATAGTAC
TTCAATCGGGAATAGATGCTGTTGCTTGATATTTTTTCTTGATAACTTAA
ATAGTGATATATTGCATTGGATTGTTATTTTGCATTCAATTTTTAATTTA
GCTCTTTCCTTTTCCAAGTTTATGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_d23.g1 MSMg01no190_d23.g1 CHROMAT_FILE:
MSMg01no190_d23.g1 PHD_FILE: MSMg01no190_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:26 2005
         (289 letters)



>mm_chr13_19750083_19750771
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagatataggaaatacaatttcagtttgagatggcttcttgggaaagcacctattcctg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taagatatagaaaatacaatttcagtttgagatggcttcttgggaaagcacctattcctg 430

                                                                       
Query: 61  gtggagtaactgactatttattgtggaggactggtctaatggcagcttgaagatggccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtggagtaactgactatttattgtggaggactggtctaatggcagcttgaagatggccat 370

                                                                       
Query: 121 agctttgcaagaaaatatgggatgcttgattgggccctctcaactttacttattgggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agctttgcaagaaaatatgggatgcttgattgggccctctcaactttacttattgggaga 310

                                                                       
Query: 181 aatatccaccataaccacaattaaataaaaattacccagagaaagttgtgatcatagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aatatccaccataaccacaattaaataaaaattacccagagaaagttgtgatcatagctg 250

                                                            
Query: 241 caacatctttaattgatcataggaattttgaaatgtggatgagaaaaat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caacatctttaattgatcataggaattttgaaatgtggatgagaaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)