BAC Information

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BAC

Clone NameMSMg01-190M20
Chromosome13 (Build37)
Map Location 49,064,430 - 49,064,667
singlet/doubletsinglet
Overlap geneC030044B11Rik
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304
Downstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190M20.T7 (MSMg01no190_m20.b1)MSMg01-190M20.TJ (MSMg01no190_m20.g1)
ACCAG381022AG381023
length685685
length of high quality
(start - end)
259 (427 - 685)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no190_m20.b1 PHD_FILE: MSMg01no190_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:11 2005CHROMAT_FILE: MSMg01no190_m20.g1 PHD_FILE: MSMg01no190_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATTTTACCTAGTCTGGTACCTTAGTTATGGTTTCTAGTGCTG
TGAAGAGACACCATGACCCTGGCAACTCTTACAAAGAAAAACATTTAATT
GGGGCTGGCTTACAGTTCAGAGGTTTAGTCTACCGTTGTCATGGCAGAAA
ATATGGTGGCATGCATGCAGACATGGTGTTGGAGACATAGCTGAGAGTTC
TACATCTGGATCCACAGGCAGCAGGCAGAGAGACACTGGGCCTGGTGTGA
GCATCTGAGACCTCTTTTGCCACCCCTAGTGACATACTTTCTCCAACAAT
TTNCATCCNCTCTGTTGGCGAANCCCCCATGAGTCTATGGGAGTCATTTT
TTCATTCAAACCACAAAAACAAAATAGCCAGCTTGCTCTGGGAGGTCCCC
AGTCTCTGTTTCTCACACTCTGGAATCTCCGGTACGTTACCATGCCCACC
AGTTTTTACAGGGGTTCTGGGGACTCCAAGCTCTGGCCTCCATGCTTGTG
GAGCCAGCCAGCACTTTACCTGCTGACCCATCGCCTCAGCCCTGGTCTAA
TATTTTCTATAGCTTGCCTTCCAGTTTGCTAGATCCACCCTCATCTGTAT
CTACGTCAAACCTATGTATTGAGTTTCTCATTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAGTTTCTTTTAATTTTTTTTT
TCTTTTAAAGACTATTTTTATTCTTTGACAGTTTCATGCGTGTATACAAT
GAACTGTGATCATAACACCCCATTCTTCCACCAATCTCAAACACAGGCTC
GTGTGATGTAAACAGATGAAATGCGCTTAGGGCCTTGATGGATTTTCCTT
AATTTTTTTAAACCCGATACGTTATGCCACTTATGTATAAAATTAGTGAT
GAGGCCACTAGTCCGCCTAGCTGAGTAAAAAGCTTAATCCCAAAGTAAGT
ATTTCTTGTTCCCCCCACCACCCCCATTACACTTAAAGCCTCACTAAATA
ATAACATCCCCCAAAAAAATAAAGTTTTATGTAATTCACAGCTAGTATAC
AAGATTGCACATGAATCACTTGTATTTTCTTAACAAGATTACATTCCATA
TATATTTCATTCACTTGTTTAGGTTTGCGTTTATTTTTGTTGTGGTTTCT
TGTTTGCTGGCCTGCTTGGGCTAGCCCTTTGCCAGCCTGACTGCCTGGCC
TGTTTTTTATTTCTTTTAAACATTACGGCTTGTATTTATTTATTTTAAAA
AGGAAGAGGGGAGAAAGCTTTTGTGCTATAACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_m20.g1 MSMg01no190_m20.g1 CHROMAT_FILE:
MSMg01no190_m20.g1 PHD_FILE: MSMg01no190_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:11 2005
         (239 letters)



>mm_chr13_49064229_49064867
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagtttcttttaattttttttttcttttaaagactatttttattctttgacagtttca 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tatagtttcttttaa-tttttttttcttttaaagactatttttattctttgacagtttca 260

                                                                       
Query: 61  tgcgtgtatacaatgaactgtgatcataacaccccattcttccaccaatctcaaacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcgtgtatacaatgaactgtgatcataacaccccattcttccaccaatctcaaacacag 320

                                                                       
Query: 121 gctcgtgtgatgtaaacagatgaaatgcgcttagggccttgatggattttccttaatttt 180
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcctgtgatgtagacagatgaaatgcgcttagggccttgatggattttccttaatttt 380

                                                                      
Query: 181 tttaaacccgatacgttatgccacttatgtataaaattagtgatgaggccactagtccg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaacccgatacgttatgccacttatgtataaaattagtgatgaggccactagtccg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)