BAC Information

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BAC

Clone NameMSMg01-191E03
Chromosome13 (Build37)
Map Location 116,228,066 - 116,368,250
singlet/doubletdoublet
Overlap geneLOC100041023, LOC547402
Upstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191E03.T7 (MSMg01no191_e03.b1)MSMg01-191E03.TJ (MSMg01no191_e03.g1)
ACCAG381338AG381339
length751672
length of high quality
(start - end)
295 (4 - 298)128 (78 - 205)
definitionCHROMAT_FILE: MSMg01no191_e03.b1 PHD_FILE: MSMg01no191_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:48 2005CHROMAT_FILE: MSMg01no191_e03.g1 PHD_FILE: MSMg01no191_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,228,066 - 116,228,352)(116,368,123 - 116,368,250)
sequence
GAGGATCCGCGGAATTCCACCTTAGAATTCAAGGAAACCTTTGGCCAAGA
GGTAAGTAAAGAATCAGTAAGAAACAGCCTTCTTAGCAAAATCAGTTGTT
GGAGGATGGTTTTGCTCACCGAGTAAGTGTTGTCTTTGTATTTTTAATTG
CTGATTCCTGGCAGAGATTATGATTAGAATCCATATTCTTACCCATTGCT
TTCATATGTGTATTATAATGAAAGAAAACAAGAGGCATAGGCTGAGTCCT
ATTTTTTTTCCCTTGGGGACTAAAAGACTTTACATTCTTTGTCTTGAAAC
TGAAGAAGAACGAAGACCAAAGGGTGTTTTTTTTCCCCCCCCCCCCCCGG
TGGAAANAATCACCCCGCGCCATGCGTTTTCCGAGTCTATGTTTTGAATA
TAATATTTTCCGGTTGTCCGCTTTTTTATCATTTCCTTTTTACTGTGTCC
CATTCCCTTACTTCCACCTTATATATGAAGACCCCCGTTCGTCTATTTTT
ATTCCCCTATTTTGCCTGCTAGACTCCCTCGACATTTCCCGCTTTCTTGT
TGATATTCCCGTCCCTTCTCAACCATTATCCATTATCTTCTGTTTTTCTT
CTCTCCTCTTCTTTCCTATCTCTTCATTCCGCCCCCCTCCGCCTCCCCTT
TCTCTTCTTTTTGGCACCCTCTTCCTTTATTCTCTTTCTTTCTCTTCATT
CTTCCTTTTTCCCCATCTTTCGTTTATTTACCTCCCAACCCTCCCTTTCC
C
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTATTAGGGAAAGTCTCTTC
TAAATGATGGCAGGAAAATGAGTTGTAGCTGGTAAGATCTCTGGAAGATT
TGATCCAAACAGGAATAGAAATCGATAAAAATCAGAAAAAATAGCAGGTA
GAATCTGAGTGTTAAAAAAGTTCAGTATGGAACACAGTTTAAAATAATTA
TCATAACATGTACCATACTTCCCAAGGAATTTTAAAAAAAAAAAAAGGAG
GCGCCTTGTAACACTCTGGCTCGGATTTTATTCAAATATTTTTTTAAAAG
GAACATTTAGGAGGGGAAAACACACTTTTTTTTATGTTTTCCCCCCCCCC
CCCCCCCCCATGTTTATAAAATTATTTATTTAATCGGTTGCCCTTTTTCC
CCCCCTTTAAAAAAAAAAAAAAAAAAAAATCCGGGCGCGGGGCGTGGGTG
GCCGTCTTTCCCAACACCCCCATTTTCTCACATGTTATGCCTTCTACTTT
TGTATCACACTAACCGCTCAATTTATTCTCCGATCGCCGTTCGAAAAATA
GCACCACCCCCCCCTCTTTTAAAAAACCCTTAACCTCCACTTTGTCTTCC
CCACACCCCCTCTTATCTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_e03.b1 MSMg01no191_e03.b1 CHROMAT_FILE:
MSMg01no191_e03.b1 PHD_FILE: MSMg01no191_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:48 2005
         (295 letters)



>mm_chr13_116227858_116228552
          Length = 695

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattccaccttagaattcaaggaaacctttggccaagaggtaagtaaagaatcagtaag 68
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 gaattccaccttagaattcaaggaaacccttggccaagaggtaagtaaagaatcagtaag 268

                                                                       
Query: 69  aaacagccttcttagcaaaatcagttgttggaggatggttttgctcaccgagtaagtgtt 128
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 269 aaacagccttgttagcaaaatcagttgctggaggatggttttgctcaccgagtaagtgtt 328

                                                                       
Query: 129 gtctttgtatttttaattgctgattcctggcagagattatgattagaatccatattctta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtctttgtatttttaattgctgattcctggcagagattatgattagaatccatattctta 388

                                                                       
Query: 189 cccattgctttcatatgtgtattataatgaaagaaaacaagaggcataggctgagtccta 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cccattgctttcatatgtgtattataatgaaagaaaacaagaggcataggctgagtccta 448

                                                          
Query: 249 ttttttttcccttggggactaaaagactttacattctttgtcttgaa 295
            ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 449 ctttttttcccttggggaataaaagacttttcattctttgtcttgaa 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no191_e03.g1 MSMg01no191_e03.g1 CHROMAT_FILE:
MSMg01no191_e03.g1 PHD_FILE: MSMg01no191_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:48 2005
         (128 letters)



>mm_chr13_116367923_116368450
          Length = 528

 Score =  240 bits (124), Expect = 3e-68
 Identities = 127/128 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttattagggaaagtctcttctaaatgatggcaggaaaatgagttgtagctggtaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtttattagggaaagtctcttctaaatgatggcaggaaaatgagttgtagctggtaaga 269

                                                                       
Query: 61  tctctggaagatttgatccaaacaggaatagaaatcgataaaaatcagaaaaaatagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 268 tctctggaagatttgatccaaacaggaatagaaatcgataaaaatcagaaagaatagcag 209

                   
Query: 121 gtagaatc 128
           ||||||||
Sbjct: 208 gtagaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)