BAC Information

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BAC

Clone NameMSMg01-191G03
Chromosome13 (Build37)
Map Location 49,187,602 - 49,187,881
singlet/doubletsinglet
Overlap geneWnk2
Upstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik
Downstream geneNinj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191G03.T7 (MSMg01no191_g03.b1)MSMg01-191G03.TJ (MSMg01no191_g03.g1)
ACCAG381419AG381420
length802813
length of high quality
(start - end)
151 (47 - 197)280 (138 - 417)
definitionCHROMAT_FILE: MSMg01no191_g03.b1 PHD_FILE: MSMg01no191_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:58 2005CHROMAT_FILE: MSMg01no191_g03.g1 PHD_FILE: MSMg01no191_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGGGAGAATTCAGATGAACACATGCCTGCTACATCTTGATTT
TATTCCAGTGAAACCCATTTTAGACTTCTAGTCTCTCTAACATGTGATAA
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
AAAAAAAAAATTTTTATATTCCCCCCCCGCCCCCCCCAAAAAACCAATGA
AAAACCAACGATGTACCCCCCCAAAAAAATAAAAAAAAAAAAATGGTTCG
CGGGGTCCACCCTTTTTACCTTCTTTATTCTACACTGTCCCCACTGACCG
CCCCCGTTTCTATTAAATCTTAATCCCCGCACAAAATAACCGGTTCCCTC
AAATTCCCCTCTCAATATCTTTTTTCATAGAAACAAGCGTCTGGGGAACA
ACAACACTAAGAATAATTTGGGCCCAATTACCTTTACTACCAGTTTTGTC
CTCCACCCGACTTCCCTTAACCTTTTAACTACAGCGCCTACACTATCTAT
TATTATTACATTAGATCCCTTTATTTTTTTTGAATTTTTTACATATTTGT
ATTAACTATTTCCCCGACTTATTTCACTTTTACTTCACTATCCCCACTCA
CC
CCCTTTATAACCCTTTCCCTTNACTACATATATATTCATTGTTGGNTTCC
CCNNNNNCCCGACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTCATAGCTC
CCTCAGCTCCAGAACACAGCTCTGCCCTCAACTCAGTGAGACCCAGGCTC
CGATGGGTCCTAGGCCTCAGGCTGGGAAGAGCCCTGGGTAGCAAGCTGGG
CCGCGGGCTACACCAGGGTGTCCGTGGTGCCTCAGCGCTGGGTGGTGCCA
GGTAACTTTGCTCTGTTTTCCTCAGGGCATCAAGCCGGCCAGCTTCGAGA
AGGTGCATGATCCGGAGATTAAGGAGATCATCGGGGAGTGCATCTGTAAG
AACAAAGAGGAGAGGTGATTTTTTTGCCCCCCACCCGCCGCCAGTGTTCT
CCAGCTGATGCTGGTCCAGCTGGCGTTTAAAGAAGAAAATCTCCATGCAG
CCTTCCCGGGCCAGGCTATGTGACACCAGACTTGCGAGTTGCTGTGAGCA
TTGTAGATTCCCACATCTCCTCCCTGCCTCTGTATACTGGCTCCTAATTC
AGTCTGAAGCGCTGTTGGATGCAAGGCCTTTGCCCCTGCGCCTCCTTGTC
ACCCATTTTCTGTCCACTTGATATTATTGCCACCTCGCTCCCTGATACAT
TCCCCCCCCTCAACGGAATACCATCCTGCAGCCACCCCCCCCCCCATATT
ATTCTTAGTTAAAGCAAAACTTATACTGTCTTTTCCATACAACATAATCT
GCGCATATTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_g03.g1 MSMg01no191_g03.g1 CHROMAT_FILE:
MSMg01no191_g03.g1 PHD_FILE: MSMg01no191_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:58 2005
         (280 letters)



>mm_chr13_49187402_49188081
          Length = 680

 Score =  511 bits (264), Expect = e-149
 Identities = 276/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctcatagctccctcagctccagaacacagctctgccctcaactcagtgagacccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgcctcatagctccctcagctccagaacacagctctgccctcaactcagtgagacccagg 421

                                                                       
Query: 61  ctccgatgggtcctaggcctcaggctgggaagagccctgggtagcaagctgggccgcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 420 ctccgatgggtcctaggcctcaggctgggaagagccctgggtagcaagctgggccacggg 361

                                                                       
Query: 121 ctacaccagggtgtccgtggtgcctcagcgctgggtggtgccaggtaactttgctctgtt 180
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 360 ctacaccagggtgtccgtagtgcctcagcactgggtggtgccaggtaactttgctctgtt 301

                                                                       
Query: 181 ttcctcagggcatcaagccggccagcttcgagaaggtgcatgatccggagattaaggaga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttcctcagggcatcaaaccggccagcttcgagaaggtgcatgatccggagattaaggaga 241

                                                   
Query: 241 tcatcggggagtgcatctgtaagaacaaagaggagaggtg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcatcggggagtgcatctgtaagaacaaagaggagaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)