BAC Information

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BAC

Clone NameMSMg01-191P12
Chromosome13 (Build37)
Map Location 10,691,037 - 10,691,319
singlet/doubletsinglet
Overlap genenone
Upstream geneZmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191P12.T7 (MSMg01no191_p12.b1)MSMg01-191P12.TJ (MSMg01no191_p12.g1)
ACCAG381802AG381803
length729732
length of high quality
(start - end)		310 (46 - 355)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no191_p12.b1 PHD_FILE: MSMg01no191_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:45 2005CHROMAT_FILE: MSMg01no191_p12.g1 PHD_FILE: MSMg01no191_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGCTTTGTTTACCATTTTTTAAATAGGGTCATTTGGTT
CTCTGGAGTCTAACTTCTTGAGTTCTTTGCATATATTAGATATTAGATGT
GGGATTGGTAAAGATCTTTTTCCAATCTGTTGGTTGCCATTTTGTCCTAC
TGACAGTGTCCTTTGCCTTACAGAAACTTTGCAATTTTATAAGGTCCCAT
TTGTCATTTCTTGATCTTAGAGCATAAGCCATTGGTCTTCTGTTCAGGAA
ATTTTCCACTGTGCCCAAGTGTTCGAGGCTTTTCCCTACTTTCTCTTCTA
TGGTATTTTTTGCCTCCGCCCTCCACCTGGAGGTGCTTGACCCACTTTTG
CTTGAGCTTTGTACAAAGAAATAAAAATTGATTGAGTTGCGTTTTTCTAC
ATACTGACTACCAGTTGAACCAAGACCATTTGCTGAAAATGTTGCTCTTT
TTGTCCACTGGATGGTTTTAGCTCTTTTGTCAAAGATCATAGTGTCATAC
TTGTGTGAGCTCATTCCATTGATCTACCTGCTTATCTCCGTATCAATGCC
ATGTATGTTCTGTTGCTGCTAACTCTGATCTTCATATTTCCTTCTTTCTT
TCATCTTCGCGCTTGTGTATATTTTATTTTTTTCCTTCCATCTTTTTCTC
CTCCTGTTTCTTATCTATTTCCTCTCTCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGCGAAGTAGAATCATCTAAAA
TTCAATAGATGAACCAACTATCCTAAGGTGACATTTTTATTCTAAGGTGG
CATTTTTGTAGCTTAGAGACTGAGTTTAAAGAGATTTTTTTTTAAATTGG
TTCTTGGAGATCAGATGGGAAAGGCAGAATAGTAGGGAAATATCAGACAA
AAGAAGGGTAAAGTTTTGTTTTTGTTTTGTTTTAAATCAGAATATTTGGA
GAAGTTCTGAGTTGAATTTTTTGATAAATGGGAATGTGAGCCTTATTAGA
ATGTTAAGGTTGGACTCCAAGCANAGCCCTGTGATGGGAAAGGAGAGCAA
GACAAGTCAAAATCTCTATAACTCAACAAAAAATCATCGCGGGCGGGAGA
GGTGGAGGTGAAAATGCTGATGGAGAAGTGAACGTTAAAAATGAGGAAAT
CTAAAAATACAGAGATATTATGAATGCTCAATATGAATCACTCAACAGGT
GAGAGTCACAGAGGTGACCTTAATCCAACCAGGCACTGAAAGGACTCAAT
AGGCTGTGGACATGGCTTTATTTATGTCTACTTACCCCACCTGTAGGGTT
TGTTTGAGATCTTGGATATCAACTGANACATGAGGCACTTGTTCGTTATA
ACTGTCTCATTCCTCTCCAGGATTCTAGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_p12.g1 MSMg01no191_p12.g1 CHROMAT_FILE:
MSMg01no191_p12.g1 PHD_FILE: MSMg01no191_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:46 2005
         (281 letters)



>mm_chr13_10690837_10691519
          Length = 683

 Score =  489 bits (253), Expect = e-143
 Identities = 275/287 (95%), Gaps = 10/287 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcgaagtagaatcatctaaaattcaatagatgaaccaactatcctaaggtgacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 attgcgaagtagaatcatctaaaattcaatagatgaaccaactattctaaggtgacattt 260

                                                                       
Query: 61  ttattctaaggtggcatttttgtagcttagagactgagtttaaagagatttttttt-taa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 261 ttattctaaggtggcatttttgtagcttagagactgagtttaaagagattttttttaaaa 320

                                                                       
Query: 120 attggttcttggagatcagatgggaaaggcagaatagtagggaaatatcagacaaaagaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggttcttggagatcagatgggaaaggcagaatagtagggaaatatcagacaaaagaa 380

                                                                       
Query: 180 gggtaaagttttgtttttgttttgttttaaatcagaatatttggagaagttctgagttga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtaaagttttgtttttgttttgttttaaatcagaatatttggagaagttctgagttga 440

                                                          
Query: 240 at-----tttttgataaatgggaatgtgagccttattagaatgttaa 281
           ||     |    |||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaact----gataaatgggaatgtgagccttattagaatgttaa 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 683
Length adjustment: 9
Effective length of query: 272
Effective length of database: 674
Effective search space:   183328
Effective search space used:   183328
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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