BAC Information

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BAC

Clone NameMSMg01-192F17
Chromosome13 (Build37)8 (Build37)
Map Location 102,108,851 - 102,108,98149,792,251 - 49,792,456
singlet/doubletsingletsinglet
Overlap geneLOC100039971
Upstream geneEG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik
Downstream geneLOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192F17.T7 (MSMg01no192_f17.b1)MSMg01-192F17.TJ (MSMg01no192_f17.g1)
ACCAG382060AG382061
length1,2811,243
length of high quality
(start - end)
131 (231 - 361)208 (71 - 278)
definitionCHROMAT_FILE: MSMg01no192_f17.b1 PHD_FILE: MSMg01no192_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:36 2005CHROMAT_FILE: MSMg01no192_f17.g1 PHD_FILE: MSMg01no192_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:36 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,108,851 - 102,108,981)(49,792,251 - 49,792,456)
sequence
NNNAATCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCCAGAGATTCTGGAAAATTTTCAAGTCTGGACTATGGCATTTACACCCA
TAAATGACAAATGTGGCTGGAAACGCTGCTCTCCATGAAAGGAATATATA
GGTTTCTTTTGGTTTTATATATATATATATATATATATATATATATATAT
GTATATATAAGAAAACTGAAATTGTATTTGTGGCTAACATGCAGAGGAAT
GTGTTTCAGTGTGACATGTTCGTGAACTTACATAATCATACTTTGTACTT
ATTTCCCACGATACATATATTGACTATATTCTGCATTTGAGAGAAAACAA
TAAACCTAAGTCTGGGTTGTTTTAACATAATGATCCACTGTTTCATTATT
TTTTCTAGAAGTGCCATAATTTCATTGTTAACAGGAGACTGAAATGTTAT
TTTTTTTCCCCCCCCACCAANTNATTTTCTATGTCCATAAAAAAGGAGGG
TGACATCTAGGTTGTTTCATGTACTTGACTGTTGCGAACGGAGCAACATC
GACCACATGTACAGTAGTATGTTATCTTAAGGTCCTCTAGTATATACACC
CCAGTGTTATACTGTATCTTATGCTAATTGATTTAGTATTTGGGGGAGCT
TCTTAATAAATTTCCATATTGGTTGTATTTGCTGAAGCTTCCTTCTCCAA
TGATTGATTTCTGCTCTTTTTCTCACATTATTTTCATTGTTTACATGTTA
CCCTGTCTTCTTGATTTATCTCCTTCTTGTCTTTTACTAGTTCGAATCAT
TACTACTGTTTTTTTCTTTTTTTCTTGATATTTCACTTATTTCTATTGTC
TCTCCCTCTTTTTTTTTTCTTTTCTTTTCTATTTTTTTTTATCAATCTTT
ATCTTTTTTTATTATCTTTTCTTCTACTTATTTTATGTTTCTTTCTTTTC
ATATTTTCTACTCTTTTTTTTCCTTTCTTTCAACTTTTTAATTCTTCATT
TTTTCTACTTTCTTTTCTTTTTTTCCTTTTCCTAACTTTTCTTTCCATTT
ATTCTTTCTTTCATTTATTTATCATAGATTTATTATTACTTCTCTTCTTT
TTTTTCTTTCTTATTTTTGCACTTTCTCTTCTTTTTCAATTTTTGTCTTT
CCTATTTTCATTTATTTCTTATTTACTCTTTTTTTCTCTTCTATTATCAC
TTATTATTTTCTTATCTTCTTTTTTTAATCTCTTTTTATTTAAATCTATC
GTCATTCTTCTTTCTTCCTAACTCTTTCCTC
NNNAAATCTAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTGCAGTGATAGCCTCCAGCTAGGCTTA
AGAAATAGGGGATTAAATGGTTAGCTTACAGTGTAAGCTGCAACAAGACA
CTGCTATGAAGCACTGAGGTGCACGACACATGCCAGCACTCAAAAAAGGT
AACCTCTGTGCGTACATGCCTATGTGCGTGTGCGTGTGCACGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTNTCTTTNNNNTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNTTTTTT
TTTTTTTCCCCCCCCCCCCCNNNNNNNNNNNCCCCCCCAAAAAAAAAAAG
GGGGNNTTNNTNCTTTTTTTTTTTCTTTTTTTTCCTTCCTCCTCTCTGTC
CTCTCCCCTTCTTCTTCCTTCTTTCTTCTTTTCTCCTCCTCTTTTCCTTT
TTCCTCCTCTTTTTTTCTTTTCCCTCTTCTTTCTCTTTCCTCTTTTCTCT
TTCTTTTCTTTTTTTTCTTTTTCTTTTCCTTCTCTTTCTTTCTTTCTCTC
CTCCCTTTTTTCTTTTTTTTTCTTTTTTCTCCTTCTCTCCGTCTCCTTTC
CTCTTTCTTTTCTCTTCCTTTTTTTTCCCATGCTCTTTCTTTTCTACTCT
TTCTATTTCTCTCTCTATCCCCCTCCTATTATTCTTTTTCCTTCTTCTTC
CTCTTTCTTTATTTTTTCTCTTCTCCCTACTTTCACTTTCTTCTTATTCT
TCTTTTTCTATTCACCTCTCATTTCTAAACCCTCCTTTTTCCTCTCTCTT
TCTTCCCTTTCTTTCATCCCATATCCTTCTTTTCTACTCTTTATCTCTTT
TCCTCTTGCTCTCTTCATCATTTTACTTCTTTCCTCTTCTCTATCTTTTT
CTCCTCTAACTCTTTCTTTTTTTCTCTCTTCTTTTCCTATTTTTCACTTT
ATCACTTCTCATCTTCACCCTTTCTTCTTTTCTTTTATACAATCTTCTCT
TCTCTACTCTCTCACTTTTCATCTCTCTTTTATCTTTTCCCTCTTCTTTC
CAATACCATTCTTATTCTCCCCCTGTTTATCCCTCTTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_f17.b1 MSMg01no192_f17.b1 CHROMAT_FILE:
MSMg01no192_f17.b1 PHD_FILE: MSMg01no192_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:36 2005
         (131 letters)



>mm_chr13_102108651_102109181
          Length = 531

 Score =  230 bits (119), Expect = 2e-65
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctaacatgcagaggaatgtgtttcagtgtgacatgttcgtgaacttacataatcata 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tggctaacatgcagaggaatgtgtttcactgtgacatgttcgtgaacttacataatcata 260

                                                                       
Query: 61  ctttgtacttatttcccacgatacatatattgactatattctgcatttgagagaaaacaa 120
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 261 ctttgtacttatttcccacgatacatatattgtctagattctgcatttgagagaaaacaa 320

                      
Query: 121 taaacctaagt 131
           |||||||||||
Sbjct: 321 taaacctaagt 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no192_f17.g1 MSMg01no192_f17.g1 CHROMAT_FILE:
MSMg01no192_f17.g1 PHD_FILE: MSMg01no192_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:36 2005
         (208 letters)



>mm_chr8_49792051_49792658
          Length = 608

 Score =  383 bits (198), Expect = e-111
 Identities = 204/206 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgcagtgatagcctccagctaggcttaagaaataggggattaaatggttagcttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 acttgcagtgatagcctccagctaggcttaagaaataggggattaaatggttaccttaca 260

                                                                       
Query: 61  gtgtaagctgcaacaagacactgctatgaagcactgaggtgcacgacacatgccagcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtaagctgcaacaagacactgctatgaagcactgaggtgcacgacacatgccagcact 320

                                                                       
Query: 121 caaaaaaggtaacctctgtgcgtacatgcctatgtgcgtgtgcgtgtgcacgtgtgtgtg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaaaggtaacctctgtgcatacatgcctatgtgcgtgtgcgtgtgcacgtgtgtgtg 380

                                     
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtg 206
           ||||||||||||||||||||||||||
Sbjct: 381 tgtgtgtgtgtgtgtgtgtgtgtgtg 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)