BAC Information

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BAC

Clone NameMSMg01-196A03
Chromosome13 (Build37)
Map Location 82,465,751 - 82,571,412
singlet/doubletdoublet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196A03.T7 (MSMg01no196_a03.b1)MSMg01-196A03.TJ (MSMg01no196_a03.g1)
ACCAG384298AG384299
length747761
length of high quality
(start - end)
322 (56 - 377)291 (84 - 374)
definitionCHROMAT_FILE: MSMg01no196_a03.b1 PHD_FILE: MSMg01no196_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:24 2005CHROMAT_FILE: MSMg01no196_a03.g1 PHD_FILE: MSMg01no196_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,465,751 - 82,466,068)(82,571,122 - 82,571,412)
sequence
NAAAAAACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACCAAAGATGGGTTTACCTTCACACGGATACTGTT
GAGGAAGTTACCTTCCCCAGGTAACTTCAGAGTTGCCTCTCAGTTTGCTG
AGACTGTTTCTTTATAAGTACGTTTACACGACAAGGTGCTTTCCCACTAT
GCATTTGCCATCCCTCCTTTTTGCTCTTTTTATAAATTAAAGTGACAATT
CACAGAGAAGTTACAAGTCTTGTTCTTGCTGCTCTATGAAACTGGACATC
ACACCAGCATTCCTACAGATCATGGCTGGTATCTCAACCGCACCTTGGAC
AGCTCATTTTACATGCCTTTTATATAATTTAAACGCGCGCCTAATTTTAA
TTTTCTATTCTGAAATGACTCCAAAATGGCAGAAATGTTGCAAAGATGGT
GAATTATTAATATTTCTCTAGATTGCTTGCGTGCTGACCCCATCTTGCTC
TTTTCTCTTAAACTGCCAGAATGATTAATGCTAGTATAATACTCAAGCGC
TTCCACTGGTCCTCAGAAACATTCCTGCGCATGATCCTACCTGATCCATA
CATCTGTTTATATTATCCTTTTATTGCTCCCACATATTTCGAGTATTACT
AATTTACTTATTCCCCATCCTTTCCGCTTTTTTACTATCGCATATTTTTA
GCCCACTTATTATCTTTCGCGTTTTACACCATACCTGGCTTTGTGTC
CCCCAACACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATTCGATGAAAACGT
GATAGCCAAGGCCTCCAGAAAATGTTGGCAGTCACCATAAGGCATTCCAA
CAGCTGGCCTGGATCAAGGGCTCTCTGTCAATCATAGAGAAATGTGACAG
ACTTGTGACTTTGTGGCAAAAGTGACAAAATTTACAGTTTGAGTGAGTCA
CATCAATAACAAAGTAATTTGGGTTGTTAAAATACACAAAGATGCTCCAA
TTTGTTTTCTAACAAGTTTAATAAAAAATAATGTATATTTTCATATTTAT
TAGTAGAAAACTGAAAAATTAGGAAAATGCCTACACCCTCCACTATTTTA
CTGCGAATTACTAAAGTAACATTATATTACTTCTCATCATGAATATACTT
GCCATCTCACTCTAATTAAAACCCCAGTTTGTCCTGTTAAACTGTTTAAT
CCGATCATGCACCTGATTTCCATTCATCTCCCACTATCCCCCCCTTTTTT
CCATTTATTTATTTTCTTTTCCTCTCCCCACTTTTTCTCTTCCCCTTTTT
CCCTTCTTACCCCCATTTTCCTCCATTTTTACCCTTTTTTCCCCCCCTTT
TTCCCCTTTTTTCCCCCTTCCATTCCCTTCTTTCCTCCCCTTACTACCTT
CTCCCTCTCTCCCCTTCCCCCCTTCCCTCCCTTTTCCTATTCCCTTTTTC
TTTATCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_a03.b1 MSMg01no196_a03.b1 CHROMAT_FILE:
MSMg01no196_a03.b1 PHD_FILE: MSMg01no196_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:24 2005
         (322 letters)



>mm_chr13_82465548_82466269
          Length = 722

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccaaagatgggtttaccttcacacggatactgttgaggaagttaccttcccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccaaagatgggtttaccttcacacggatactgttgaggaagttaccttcccc 263

                                                                       
Query: 64  aggtaacttcagagttgcctctcagtttgctgagactgtttctttataagtacgtttaca 123
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 aggtaacttcagagttggctctcagtttgctgagactgtttctttataagtaggtttaca 323

                                                                       
Query: 124 cgacaaggtgctttcccactatgcatttgccatccctcctttttgctctttttataaatt 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgacaaggtgctttcccattatgcatttgccatccctcctttttgctctttttataaatt 383

                                                                       
Query: 184 aaagtgacaattcacagagaagttacaagtcttgttcttgctgctctatgaaactggaca 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagtgacaattcacagagaagttataagtcttgttcttgctgctctatgaaactggaca 443

                                                                       
Query: 244 tcacaccagcattcctacagatcatggctggtatctcaaccgcaccttggacagctcatt 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 tcacaccagcattcctacagatcatggctggtatctcagccgcaccttggacagctcatt 503

                             
Query: 304 ttacatgccttttatata 321
           ||||||||||||||||||
Sbjct: 504 ttacatgccttttatata 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no196_a03.g1 MSMg01no196_a03.g1 CHROMAT_FILE:
MSMg01no196_a03.g1 PHD_FILE: MSMg01no196_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:24 2005
         (291 letters)



>mm_chr13_82570980_82571670
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattcgatgaaaacgtgatagccaaggcctccagaaaatgttggcagtcaccataaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 433 acattcgatgaaaacgtgatagccaaggcctccagaaaatgttggcagtcagtataaggc 374

                                                                       
Query: 61  attccaacagctggcctggatcaagggctctctgtcaatcatagagaaatgtgacagact 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attccaacagctggactggatcaagggctctctgtcaatcatagagaaatgtgacagact 314

                                                                       
Query: 121 tgtgactttgtggcaaaagtgacaaaatttacagtttgagtgagtcacatcaataacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtgactttgtggcaaaagtgacaaaatttacagtttgagtgagtcacatcaataacaaa 254

                                                                       
Query: 181 gtaatttgggttgttaaaatacacaaagatgctccaatttgttttctaacaagtttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtaatttgggttgttaaaatacacaaagatgctccaatttgttttctaacaagtttaata 194

                                                              
Query: 241 aaaaataatgtatattttcatatttattagtagaaaactgaaaaattagga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaataatgtatattttcatatttattagtagaaaactgaaaaattagga 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)