Query= MSMg01no196_n24.b1 MSMg01no196_n24.b1 CHROMAT_FILE:
MSMg01no196_n24.b1 PHD_FILE: MSMg01no196_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:33 2005
(600 letters)
>mm_chr13_18090588_18091587
Length = 1000
Score = 563 bits (291), Expect = e-164
Identities = 300/303 (99%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 299 aaggaaagactacccagatactgtcccaccaa-ggcataaatcccacatacagttttcaa 357
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1000 aaggaaagactacccagagactgtcccaccaacgg-ataaatcccacatacagttttcaa 942
Query: 358 acccagacactattgtagatgccaagaagtgcatgctgacaggagcctgatatagctgtc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 acccagacactattgtagatgccaagaagtgcatgctgacaggagcctgatatagctgtc 882
Query: 418 tcctgagaggccctgccagagccttacagagcccatctcactggtttagaacacaaagcc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tcctgagaggccctgccagagccttacagagcccatctcactggtttagaacacaaagcc 822
Query: 478 ttatctaatgaataatctggaacttgggacttctttttctactgctgtgttcagtcacac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttatctaatgaataatctggaacttgggacttctttttctactgctgtgttcagtcacac 762
Query: 538 agcaaacgacctggggcttcccaagtctcagagttccgagagaagcatgcaatagctgca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agcaaacgacctggggcttcccaagtctcagagttccgagagaagcatgcaatagctgca 702
Query: 598 gct 600
|||
Sbjct: 701 gct 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_n24.g1 MSMg01no196_n24.g1 CHROMAT_FILE:
MSMg01no196_n24.g1 PHD_FILE: MSMg01no196_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:34 2005
(278 letters)
>mm_chr13_18015632_18016309
Length = 678
Score = 522 bits (270), Expect = e-153
Identities = 276/278 (99%)
Strand = Plus / Plus
Query: 1 tagaccgcagcaaagatagccacacataagtcttactccattagtttcctcccagtttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaccgcagcaaagatagccacacataagtcttactccattagtttcctcccagtttct 260
Query: 61 tgtccaggaaagcctgaagcctgcttttgttttctgtgggaaggggagggttctggtctc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcccggaaagcctgaagcctgcttttgttttctgtgggaaggggagggttctggtctc 320
Query: 121 cattctccgctgtggagcggagctttcctcttcttgggtctttgtttataactgtccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattctccgctgtggagcggagctttcctcttcttgggtctttgtttataactgtccttt 380
Query: 181 gctagagcacaggacagtgacgcactaagatgtttctcttgcaggtggagaaatatacta 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gctagagcacaggacagtgacgcactaagttgtttctcttgcaggtggagaaatatacta 440
Query: 241 gatgacctgttgagtcgttccttttacatgctaaaata 278
||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgacctgttgagtcgttccttttacatgctaaaata 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
