BAC Information

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BAC

Clone NameMSMg01-201A03
Chromosome13 (Build37)
Map Location 91,006,362 - 91,006,684
singlet/doubletsinglet
Overlap genenone
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201A03.T7 (MSMg01no201_a03.b1)MSMg01-201A03.TJ (MSMg01no201_a03.g1)
ACCAG386726AG386727
length1,1591,194
length of high quality
(start - end)		327 (129 - 455)769 (91 - 859)
definitionCHROMAT_FILE: MSMg01no201_a03.b1 PHD_FILE: MSMg01no201_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:47 2005CHROMAT_FILE: MSMg01no201_a03.g1 PHD_FILE: MSMg01no201_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCTATGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCC
TCCAGTCATCTTTGGGATTCTGGCATTTACAGGTCTAGGAACCATTCGGT
TATGTTGGAGAGTCTAAGTTCCCGCCGCAGGCTCAGGTAATGACAACTAC
TATGACTTCCTGTTTCTTCTTCACACTCCTAAATCTGGAGAACAGAGACT
AGGGCAGGGCTGTGTAGGGCTGTTTCTGAAAGAGGACTCTGTCCTGGGAA
AAAGAGACCTATCTCTGTTGAGGGAAGAACTATGTGGGAGCATCTTGTGG
AAATGATTGCTGAGTTGAGGAAAATCAAAGCCTGCATTGTCTTGGCTTTC
AATTATTGGTGGGAAGGCAATAACCAGCCTGGAAAAGAAATAAGACACAT
TTCAGGAAAATACCTCTGAGTTTTGTTTCTTGATCTTTCTGTTTTTTTTT
TATTTCCCCGCCATTTTTTTAAAAAATGTGTCTCCTCATCCCAGAATGAG
GAAAAATATCTATGCCTTCAGGTCAACAGATAAAGGAAAGTCTTTCTTGA
GTGAATGCCTGTGTTTAGCTCTTCGAAAGTTAGAACTTCTTGGGCATGGC
CTCAAGTGAAAGGATGAAAATCATGACCATGGTTGTCTTTAGACATGAGG
ATGTACAACAGGTTTGTTAGGGAACTAAAAGATATTGTGATAGACTGTGA
GTGGATTTCTTTGCATCATTCTTCTTTCCGTTGATTTGTGTTGTTAACCT
CTAATCCATGATATTGTTTTTTGTCTTTTTGGTTTTTCTTTCCCCTTATT
TGCTGTTACTATTTTTTTCTTTCTTTTCTCTCGATTCTCCTTATATATTT
TTTTTTTCCTCTTTTTTGTTTTTTTTTATTTTCCTTTCTCTTTTTTTTCT
TTTTTTCACTTTATTTTTCCTTTCTCATTTCTATTCTTCTTATCTCTCTT
CTTTTCTTTTCCTCCTCTATTCTTCTTTTTTTTCTCTTTTTTTTTTTTTC
TCTTTTCTTCCTCCTATTATTTTTTTTTCTTTTTTTTTTTTCCTTTACAC
TTTTTTTTTCTTCTTTCCTTTTTTCTTTTCCATTTTCTCCTTATCTCTTT
CTTTTTTTCTCTCTATTTTTTCTACTTTCTCTATCTTTCTTNTCTCTTTC
TCTCTTCTA

CCTAATTTNNNNNNTTAGATGGNAGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAACAAAATGTTCAACATCCTTACCCATCAAGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
TCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTATACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGATAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATA
CAATTTGCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGA
CACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTA
CAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGTCCATGTAGAGACTG
CCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATT
GCATACACTAGCAAGATTTTATTTGAAGGACCCAGATGTAGCTGTCTCTT
GTGAGACTATGCCGNNGGCCTATCAAAACAGAAATGGGTTGTTCCCAGCC
CGCTTATGGATGGATCCCAGGTCCCCCCTGGTGGAATTTTATAAAGTACT
CCCGGATCTTAAGGGTCTGCCCCCCCTTATGTTGAACAATTTTTTTTTTT
TTCTTTTCCCCCAATTCTTTACTCTTTCTGTTATTTATTAAAAAAAGTCC
TCTCCTCCCTCCTTTTTAATAAATTTCTTTGTTTTTCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_a03.b1 MSMg01no201_a03.b1 CHROMAT_FILE:
MSMg01no201_a03.b1 PHD_FILE: MSMg01no201_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:47 2005
         (327 letters)



>mm_chr13_91006162_91006888
          Length = 727

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctcaggtaatgacaactactatgacttcctgtttcttcttcacactcctaaatctgg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 523 aggctcaggtaatgacaactactatgacttcctgtttcttcgtcacactcctaaatctgg 464

                                                                       
Query: 61  agaacagagactagggcagggctgtgtagggctgtttctgaaagaggactctgtcctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agaacagagactagggcagggctgtgtagggctgtttctgaaagaggactctgtcctggg 404

                                                                       
Query: 121 aaaaagagacctatctctgttgagggaagaactatgtgggagcatcttgtggaaatgatt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 403 aaaaagagacctatctctgttgagggaagaactatttgggagcatcttgtggaaatgatt 344

                                                                       
Query: 181 gctgagttgaggaaaatcaaagcctgcattgtcttggctttcaattattggtgggaaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gctgagttgaggaaaatcaaagcctgcattgtcttggctttcaattattggtgggaaggc 284

                                                                       
Query: 241 aataaccagcctggaaaagaaataagacacatttcaggaaaatacctctgagttttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aataaccagcctggaaaagaaataagacacatttcaggaaaatacctctgagttttgttt 224

                                  
Query: 301 cttgatctttctgtt-ttttttt 322
           ||||||||||||||| |||||||
Sbjct: 223 cttgatctttctgttgttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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