BAC Information

Click to search

BAC

Clone NameMSMg01-201L21
Chromosome13 (Build37)
Map Location 5,411,053 - 5,411,426
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201L21.T7 (MSMg01no201_l21.b1)MSMg01-201L21.TJ (MSMg01no201_l21.g1)
ACCAG387172AG387173
length721806
length of high quality
(start - end)
375 (45 - 419)---
definitionCHROMAT_FILE: MSMg01no201_l21.b1 PHD_FILE: MSMg01no201_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:10 2005CHROMAT_FILE: MSMg01no201_l21.g1 PHD_FILE: MSMg01no201_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTGTTCTCAGTTTAGAAAAAGAAAATGATTTAAGGACAGCTGTC
ATATCAGGTAAAAAGAAAGTCTTAAAAGCATTCCCCAAAGTCATATATAT
TTTACATTTTTGGTAAAGATTTGATGCAACAATGGTTTTAAAGAGCCACA
GATGTTCACAGAATGCAACTAGTCAGATGAGTTCATGGTTTCTGGGGACA
GTCAGAATTTCCGTGGAATGAGCCTCAAAGTCTATCCATTAAGCAATACA
AACAGAAATGAAAGAAAGAAAGAAAGGAAGAAAGGAAGGAAGGAAGAAAA
GGAAGAAAGGAAGAAAAGGAAGAAAAGGAAGAAAGGAAGAGAAAGAGAGA
AAGAGAGAAAGAGAGAATGACACCAAAGAGGGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAGGAGGAAATG
AAAAGCAAATTAAGGTGCTTAGGTATTTAGAAAGTGCTTTCTGGTAAAAT
GATTAGGAAATCCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA
GGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG
ACAGCCAGGACTATACAGAGAAACCCTGTCTCGAANAAAACAGAAGAGAA
CAAAACAAACAAACAAACAAA
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGTGGCAGCAGCTTGCTTATATA
GACCGGGCAAGGAGGTAGGCCCAGAAGTATGGGATGAAATGCCTTATGGA
GTGGTGTGCTATGCTGTCCTCTCCCCCCCCCTGTCTGCCTCCCCTCTCCC
GCCTCCCCTTCGCTCCCCCCCCCTTTTCTCCCTCTCCCCCTTTTGTCTCT
CCCTTTTTGTCCCCCCGCCCTTTTGCCTTCTCGTTCCCCCCCTCCCCCGC
CCCCTTCTCTCCCAAACCCCCTTTTCTCTCTCCCCCTCCCTCCCCCCTCT
TCCCCCCCCCTCCTTTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATTCCTTTTTTTTTGGCGCTTTTTCCCAACATCCCCCTCCAAAGTTTTTT
TTTCACCTTTCCCCCCTCCCCCCCCTCTTCCTTTCCCTCCCCCCCCCCCC
CCCCCCCCCCCCTTCCCCCCCCCCCCCCCTCCCCCCTCCCCCCCCCCCCC
CTTTCTCCCCCCCCCCCCCCCCCTCCTTCCCTCCCCCCCCTCCCTTCCTC
CCTCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCATCTCCCATTTCCTT
CCCCCCCCCTTCTCCCCCCCCCTCCCCCCCCCCGTTCCCCCCCTCCCCTT
CTCTTCTCCCCCCCCCCCCCCCCCGCATCACACCACCCTCTCCCCCCCCC
CCCTCTTCCCCCCTCCCCCCCCCCCACCCCTCCCCCCTCCTCTCCCCTCC
TCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_l21.b1 MSMg01no201_l21.b1 CHROMAT_FILE:
MSMg01no201_l21.b1 PHD_FILE: MSMg01no201_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:10 2005
         (375 letters)



>mm_chr13_5410968_5411742
          Length = 775

 Score =  696 bits (360), Expect = 0.0
 Identities = 369/374 (98%), Gaps = 4/374 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttgttctcagtttagaaaaagaaaatgatttaaggacagctgtcatatcag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggaattcatttgttctgagtttagaaaaagaaaatgatttaaggacagctgtcatatcag 400

                                                                       
Query: 64  gtaaaaagaaagtcttaaaagcattccccaaagtcatatatattttacatttttggtaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtaaaaagaaagtcttaaaagcattccccaaagtcatatatattttacatttttggtaaa 340

                                                                       
Query: 124 gatttgatgcaacaatggttttaaagagccacagatgttcacagaatgcaactagtcaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gatttgatgcaacaatggttttaaagagccacagatgttcacagaatgcaactagtcaga 280

                                                                       
Query: 184 tgagttcatggtttctggggacagtcagaatttccgtggaatgagcctcaaagtctatcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgagttcatggtttctggggacagtcagaatttccgtggaatgagcctcaaagtctatcc 220

                                                                       
Query: 244 attaagcaatacaaacagaaatgaaagaaagaaagaaaggaaga----aaggaaggaagg 299
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 219 attaagcaatacaaacagaaatgaaagaaagaaagaaaggaagaaaggaaggaaggaagg 160

                                                                       
Query: 300 aagaaaaggaagaaaggaagaaaaggaagaaaaggaagaaaggaagagaaagagagaaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aagaaaaggaagaaaggaagaaaaggaagaaaaggaagaaaggaagagaaagagagaaag 100

                         
Query: 360 agagaaagagagaa 373
           ||||||||||||||
Sbjct: 99  agagaaagagagaa 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)