BAC Information

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BAC

Clone NameMSMg01-203N16
Chromosome13 (Build37)
Map Location 7,326,121 - 7,326,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532, LOC667611
Downstream geneEG623516, LOC791083, LOC382722, Adarb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203N16.T7 (MSMg01no203_n16.b1)MSMg01-203N16.TJ (MSMg01no203_n16.g1)
ACCAG388460AG388461
length796792
length of high quality
(start - end)
237 (128 - 364)174 (75 - 248)
definitionCHROMAT_FILE: MSMg01no203_n16.b1 PHD_FILE: MSMg01no203_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:10 2005CHROMAT_FILE: MSMg01no203_n16.g1 PHD_FILE: MSMg01no203_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTTGTTTTTTTTTTTAAGTTTAAAAATTTTACTTATGGTCTGA
GAAGATGGGCCGATGAGTATTAAGCCAACCTGAAATTCTTATGTTTTAGA
AAAAGAATCAGTTTCCAGAAGAAACCCTCTTACCCTCCTCTGAAAACCTG
CAATTGTTTTAAATCAGTTAGTTTTGAATTTAGTGATCATGGGTATTAAT
TGTACAAATATATGTTATGCTTGTATAGCCATGACCAATATATAATACAT
GCTCAACAAATATTAGCTACTATAATCTTCAAAATATAGGTGCCTCAGTT
TCCCATATGTGTGTATTGTACCCGCCCCCCCCCTCATAGTTAGAACTTTC
CTGTTTGGGTTACTCCCCCCCCCCCAAAAAAATATTTTTTATTTTCTTAT
GACATGCAATTTACGATTTCTTTATCCCATCAGCTTCAGTTTTCATCGGA
CAATAGAAAAAAATTATCCCCCTTTATTATTACTAATGTCTTTTTCCTAA
TAATTTACCTATATTTTGACTACTTTTTTTCAATAAAATTGATTTTTTAA
TTTTTCCCCCCTATATATACTTTATTCACTCAATCTTTCTTCAACGACTT
CATTTCTATTCTTTTCTCCTTATTTTTCAATTATTGATATACTTTAATCT
AAAGATTTTATCTTCAACATCTATATTATTTTATTTTTTTTTTAAATCTC
TTCTTATCTACAATAGAATCTAATCTTTTCTATCTTACTCCACACT
NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGAGATTCTTTGTTTAGCTCTGAGCACTATTT
TTAATGGTGTTATTTGATTTTCTGGAGCCAACCTTCTTGAGTTCTGTATA
TATATTGGATATTAGTCCCCTATCTGATTTAGGATACGTAAAGATTATTT
CCCAATCTGTTGGTGGCCTTTTTGTATTATTGATGGTGTCTTTTGNCTTA
CTGAAGCTTTGTTTTTTTATGAGGTCCCATCTGTGTATTTTTGATCTTAC
AGCACAAGCCACCCGCGGCCCATTTTTTTCTTTTCCCCCAGAGCCACCCC
ACAAGGAGGAAAATTTTTTTTTTTCCCCCCCCCCCCCCCGGAAAAATGNG
GAAAGNGGAGGGGGGGGGGGTCCCCCCCCCCCACAAAAAAAAAATAATTT
TTTGTTGTTTCGGGTTTTTTCTATATTTTTTTTTCGTTAATGTTTTCACC
CTTTCTCTTATTTGTTTTTATTTATCTCTTTCCACCCCTTTTTCTCTTTT
CCCCTTCTTTTTCTCTGCTCTTTTTCCCCCCTATTTTTTTCCACTATTTT
TTTTTTTTCCTTCCTCCTTTTTCCCCTCCCCCTTTTCTTTTCCCCTTTTT
TTTTTCCTTTTTCTTTTCTTTTTTCCCCACCTTTTTTTCTCCCTCTTTCT
TTTTTTTTTTTTTATCCCCCCCCTTTTAATTTTTTATTTTTCTCTTTTTC
TTTCTCTTCTCTTCTCCCCCCTTTTTTCTCATCTTTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_n16.b1 MSMg01no203_n16.b1 CHROMAT_FILE:
MSMg01no203_n16.b1 PHD_FILE: MSMg01no203_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:10 2005
         (237 letters)



>mm_chr13_7325921_7326557
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgaaattcttatgttttagaaaaagaatcagtttccagaagaaaccctcttaccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgaaattcttatgttttagaaaaagaatcagtttccagaagaaaccctcttaccctc 260

                                                                       
Query: 61  ctctgaaaacctgcaattgttttaaatcagttagttttgaatttagtgatcatgggtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgaaaacctgcaattgttttaaatcagttagttttgaatttagtgatcatgggtatt 320

                                                                       
Query: 121 aattgtacaaatatatgttatgcttgtatagccatgaccaatatataatacatgctcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgtacaaatatatgttatgcttgtatagccatgaccaatatataatacatgctcaac 380

                                                                    
Query: 181 aaatattagctactataatcttcaaaatataggtgcctcagtttcccatatgtgtgt 237
           ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacattagctactataatcatcaaaatataggtgcctcagtttcccatatgtgtgt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)