BAC Information

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BAC

Clone NameMSMg01-203O13
Chromosome13 (Build37)
Map Location 44,910,003 - 44,910,220
singlet/doubletsinglet
Overlap geneJarid2
Upstream geneLOC100039432, A730030A06, EG637868, EG667157
Downstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203O13.T7 (MSMg01no203_o13.b1)MSMg01-203O13.TJ (MSMg01no203_o13.g1)
ACCAG388490AG388491
length786810
length of high quality
(start - end)
370 (46 - 415)217 (77 - 293)
definitionCHROMAT_FILE: MSMg01no203_o13.b1 PHD_FILE: MSMg01no203_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:14 2005CHROMAT_FILE: MSMg01no203_o13.g1 PHD_FILE: MSMg01no203_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGCCCGTTACCGTGATCTGGGAATAGAAATCCAGATTGCAATAT
TCTAAATCTAAGGATTAAAGTAAGACATGCCTCGTGTGCGTGTGTGTGTG
TGTGTGTGTGTGTTTCTACTGCCTTTTCCCTAAACTTTCAGCACCAAGTC
TACCATGTCAAAGTCACAAAATATGACCCAAGCAAGGTGTTTTGTACCTA
TAGTCCCAGATACTCAGGGAGGTGACAGGGGAGGACCCCTGAGCCCAAGA
ATCTGAGCTATCTGGATAATGTATAGATGATCCTTCACTAGGGTGAGGAG
GTGGTTACAGAATATAACATTTCACTTCTTTACAAATGCTGCTGCCATGA
TATTCAGGTGCATTACCCCCCCCACCCTGTATCCCCTATGAACCTTGTAT
TAGGGTTTTATTGCAGTAAACAGACATCATTCCCATGGCAACTCTTTGTT
TGTTATTGTTTGCTTGTTTCCTTTTCCCTCCCCTTTTTTTACCCCTTTTT
TTTTTCCCCCTTCCCTCTCCCTTCTTATTCACCTCTTTTCCCTTTTTTTT
TCTTCCTTTTCTTCATCTCCTCTTTTTCTCTTTTTTCCCCTTTTCTCCCC
TTTTTTCCTTTTCCCCCTTTTTTCCTCCTCTATCTTCCTCTTTCTTCTTT
TCTCCTTTTTATCTCCCCCACTCTTACCCCTCCATTATTTCTCCCTTCAC
TCTATATTGTTTTTATCTATCCTCCTCCTCTACTTT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCACAAAGAAACACAGCGGGTAC
TCCCCTAGAGAAAATGTTCTCTGGTAATTACCATAAACAGGAAAGGGAGC
CAACTTTCTGAGTGACACTACAAGAGCAAAGGGGGAGGGGGAAAAAAAAC
AAAACACCTGTGAAATTAACATCACAAAAAAATTATATGGACAAGGTAGG
GGAGAGTGTAATTACCCAAGTGAGATGAGGACAGGAAAGGGGGTGGTTTC
CCCTTTTTCCCTTCCTCNTTTTTCTTTTTTTTTCCTCTCTTTCCTCTTTT
TACCACTTTTTTTTTTTTTTTCCCCCCCCCCCCCCTCTTCTTCTTTCTTT
CTTTTGTTTGTTTTTTGCCCCCCCCCCCCCAAAAAAAAAAAAACTCGGGG
GGGGGGGGGGGGTTCCCCCTCCTTATCACACCCCTACATTGTCTTCCTTT
CCTCGCGTTTTTTCTTCTCCCCTTTTCCTTTTATTCTTTTCCCCTTCCTA
CTTTTCCCCCCTTCTTCCTTTTCCCTCCTCCCTCTTTTTCTTTTCCTTCG
CTCTTCCCCTTCTTCCTTTTTTTTCCTTTTCCCTCTCTTCCCTTTTCCTT
TCCTTCTCGCACCCCCTATTCCTCCCTCCATACTCTCCTTATTTTCTTTC
CCCCCTTTATCCTATTCCCCTCCCATTATATCCCCTTATCCGCCCATTTC
CGCTTACCACCCCCCCCTTTCCTATTCTTTTCCGTCCGTTCTCTTTCCCC
CGCTTTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_o13.g1 MSMg01no203_o13.g1 CHROMAT_FILE:
MSMg01no203_o13.g1 PHD_FILE: MSMg01no203_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:14 2005
         (217 letters)



>mm_chr13_44909803_44910420
          Length = 618

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacaaagaaacacagcgggtactcccctagagaaaatgttctctggtaattaccataa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cccacaaagaaacatagcgggtactcccctagagaaaatgttctctggtaattaccataa 359

                                                                       
Query: 61  acaggaaagggagccaactttctgagtgacactacaagagcaa-agggggagggggaaaa 119
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 358 acaggaaagggagccaactttctgagtgacactacaagagcaagggggggagggggaaaa 299

                                                                       
Query: 120 aaaacaaaacacctgtgaaattaacatcacaaaaaaattatatggacaaggtaggggaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaaacaaaacacctgtgaaattaacatcacaaaaaaattatatggacaaggtaggggaga 239

                                                 
Query: 180 gtgtaattacccaagtgagatgaggacaggaaaggggg 217
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtgtaattacccaagtgagatgaggacaggaaaggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 618
Length adjustment: 9
Effective length of query: 208
Effective length of database: 609
Effective search space:   126672
Effective search space used:   126672
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)