BAC Information

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BAC

Clone NameMSMg01-206F04
Chromosome13 (Build37)
Map Location 113,633,136 - 113,633,306
singlet/doubletsinglet
Overlap genePpap2a
Upstream geneLOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneLOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206F04.T7 (MSMg01no206_f04.b1)MSMg01-206F04.TJ (MSMg01no206_f04.g1)
ACCAG389979AG389980
length749793
length of high quality
(start - end)
170 (134 - 303)89 (131 - 219)
definitionCHROMAT_FILE: MSMg01no206_f04.b1 PHD_FILE: MSMg01no206_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:28 2005CHROMAT_FILE: MSMg01no206_f04.g1 PHD_FILE: MSMg01no206_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACCCATGTCTTAGAAATTCCAGACCGCTAATGATACCTT
TGTGAGCATCAGGGCACATGTTTTTATCTCAGCTAAAGATGCATCAGATA
GTGAGGTCTTAATGTCCTGAGGAAATCATCTTTAGTTATGAAGCAATCAT
CCGAGTGTCAGCTCAATAATGAACTGAGATCCCGTTTTATATGGTCATCA
ATTAGGAGTCAGGGTTTGTTTGACCGTGGTCAACTTATGGATTTCAGCTG
AAAATAGCCAACAGGATTTGCTGGTGTTTTAGGTATAAATATATGAAAGG
GTAGAAAACTACATTATTTTTTTATGCCCCCCCCCCCCATGGAATTGGGG
AAGGTGGTATATCTGTTTGTTCCCCCCAAAAAAACAAATAGATGACGGTA
GACGGTTTATATGCTTATCATATATCATACATGCAGACGACGGTAGACAG
CCGACAGTTTATTAGATTGCAGACAGCATAGCCGACAGCTGACAGTTTAC
AGTTGTCAGTACTACTATATATTTGCTGTGTATGCGATAATTTAAGTTTT
ATAGAACTTGACATACTATTCTTTATAAATTCGTGTTTTTTCCGACTTAT
AACTTTTCTTATTATCATTCTATCTCTATGATCCCTGATTTTATTGTTTA
TGTAATCTTCTCTCCACCACCTCTTTTTTTGTTTTTTTTTTGTATTCTN
CTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAAAGCTCTTCCCAGCAC
TAAATCTTGTCTGCAGGTACTTGTGTCATCTGTTAGTATGCCTGATTATA
ATGAGTCAGGATCTTGGGGGGCCCAGCTTACTCTGGCCCATTTTTGTTCC
TGAGTGTTACCAAGTATCATAAGTTGCAATAAAAGGAACTTAGACAGAAA
TGTTTCTCAATGTTTTGGGTTCTTGAATTCTGATATTGAAAATTTATTTT
CTATTTACATATCTGTCTCCTTTAACTGTATTATTACACTCTGAGAAAAG
GAGTAGCATTCTTGTTTTTTTTGCCGCCGCCCCTTTGTTTTGTTTTGCTT
CGTTTACCTACCACTGCCCCCCCCTTTTAAAAAAAAAAATCTTACCGTTT
TTTCTTCTCCTTTTTTTTTTTCCCCTCCTCTTTTTTATTTCCACCCCTCC
TCTTCCTTCTCCTTTCTTTTTCTTTTTTCCCCCTCCCCCTTCTTTTCCCT
CTTTTATTATTCCCTTCTTCCCCCCCCCTTTCTTTCTTTCCTTCGCTCCT
CCTTTTTATTTTACTTATTCCCTTTTCTCTTTTACTGCTCCAATTTTCCT
CTTTTTCAACCCATTCCCTCCCACTTTACTTTTTCTCTTATCCCTCTCCA
TTTTTCTCTTCCTTCTCCCAACTCTCATATTCCCTCCCTGTTTTTTCTTT
CCCCTTTTTTTTTTTTTTCTCCCCCCCTTCCTCCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_f04.b1 MSMg01no206_f04.b1 CHROMAT_FILE:
MSMg01no206_f04.b1 PHD_FILE: MSMg01no206_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:28 2005
         (170 letters)



>mm_chr13_113632936_113633506
          Length = 571

 Score =  253 bits (131), Expect = 3e-72
 Identities = 161/171 (94%), Gaps = 1/171 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagatgcatcagatagtgaggtcttaatgtcctgaggaaatcatctttagttatgaag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taaagatgcatcagagagtgaggtcttaatgtcctgaggaaatcatctttagttatgaag 312

                                                                       
Query: 61  caatcatccgagtgtcagctcaataatgaactgagatcccgttttatatggtcatcaatt 120
           |||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 311 caatcatctgaatgtcagctcaacaatgaactgagatcccattttatatggtcatcaatt 252

                                                              
Query: 121 agg-agtcagggtttgtttgaccgtggtcaacttatggatttcagctgaaa 170
           ||| ||| ||||  ||| |||||||||||||||||||||||||||||||||
Sbjct: 251 agggagtgaggggctgtctgaccgtggtcaacttatggatttcagctgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 571
Length adjustment: 8
Effective length of query: 162
Effective length of database: 563
Effective search space:    91206
Effective search space used:    91206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)