Query= MSMg01no207_e21.b1 MSMg01no207_e21.b1 CHROMAT_FILE:
MSMg01no207_e21.b1 PHD_FILE: MSMg01no207_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:04 2005
(815 letters)
>mm_chr13_39105115_39106328
Length = 1214
Score = 1458 bits (754), Expect = 0.0
Identities = 794/812 (97%), Gaps = 8/812 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtagctccagttccaaccctttaaaaacttagtgacatcttcaaaatgctca 63
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 854 ggaattcagtagctccagttccaatccattaaaaacttagtgacatcttcaaaatgctca 795
Query: 64 ggaagacctgtcttcactcagacttccgaaacctccttttatgtctttgtctaccgttct 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggaagacctgttttcactcagacttccgaaacctccttttatgtctttgtctaccgttct 735
Query: 124 ggctggaatcgaagcttcccagaacggcaggaacgtcacgcgtatgaatttccaatcagc 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 734 ggctggaatcgaagcttcccagaacggcaggaacgtcacgtgtatgaatttccaatcagc 675
Query: 184 tatgtttgcctggaaattatctgcttttatgatcactgttgtctcaactccctttctaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tatgtttgcctggaaattatctgcttttatgatcactgttgtctcaactccctttctaaa 615
Query: 244 agctaaattccaatagctatcattaatggggtttttagcaacttgtagtcaccatttaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agctaaattccaatagctatcattaatggggtttttagcaacttgtagtcaccatttaca 555
Query: 304 gtgggatcacatataactaaggcatgtctggggacttactatgtggaccaatcattgatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtgggatcacatataactaaggcatgtctggggacttactatgtggaccaatcattgatg 495
Query: 364 gatggttttcaacactgccctagggctgtgaaccctccctgaacaaccagagaccctgta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gatggttttcaacactgccctagggctgtgaaccctccctgaacaaccagagaccctgta 435
Query: 424 gccagttacaacttgccaaaatatgtggtcattctgactttggaaaacacttgactttca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gccagttacaacttgccaaaatatgtggtcattctgactttggaaaacacttgactttca 375
Query: 484 tccattgcaagcaacatctgctgactttccagagccttgccctatgacaagttatacctt 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 tccattgcaagcaacatctgctgactttccagagccttaccctatgacaagttatacctt 315
Query: 544 aaagggatcacggctgtaaaattaagatggacaaacagagatagctgagctttccaaact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314 aaagggatcacggctgtaaaattaagatggacaaacagagatagctgagctttccaacct 255
Query: 604 ttgattaccaaaaggacatgaatgcattctcgtccagganaaaaaaaaaaaaaaaaaaag 663
||||||||||||||||||||||||||| |||||| ||| |||||||||||||
Sbjct: 254 ttgattaccaaaaggacatgaatgcatgctcgtctggga--------aaaaaaaaaaaag 203
Query: 664 agccagcccgaatacaaagggcaactagaaaccatattaagtttggattgtaaaagcaga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agccagcccgaatacaaagggcaactagaaaccatattaagtttggattgtaaaagcaga 143
Query: 724 ctgcctctcttcgaatagcatcagcacaaacaatgcacctcctcccaatacgccaccatc 783
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 142 ctgcctctcttcgaatagcatcagcacaaacaatgcacctcctcccaatacaccaccatc 83
Query: 784 actctcagccatcccactgggatgaattgcta 815
||||||||||||||||||||||||||||||||
Sbjct: 82 actctcagccatcccactgggatgaattgcta 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 815
Length of database: 1214
Length adjustment: 10
Effective length of query: 805
Effective length of database: 1204
Effective search space: 969220
Effective search space used: 969220
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no207_e21.g1 MSMg01no207_e21.g1 CHROMAT_FILE:
MSMg01no207_e21.g1 PHD_FILE: MSMg01no207_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:04 2005
(317 letters)
>mm_chr13_39031438_39032154
Length = 717
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Plus
Query: 1 tcagtgataaagtagattaaaatgcacattaagtctttggcactgtagctatttcataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgataaagtagattaaaatgcacattaagtctttggcactgtagctatttcataaa 260
Query: 61 accagcagtgcgccttacagactcgaggaagtgctggggtcctcaccatctccgagttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagcagtgcgccttacagactcgaggaagtgctggggtcctcaccatctccgagttgg 320
Query: 121 aagcattgtgcagtttcatggccttctcctgaacgttcccaatgacagcgtctgcacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcattgtgcagtttcatggccttctcctgaacgttcccaatgacagcgtctgcacaca 380
Query: 181 gcgccagggagataagcatcacaccttcaaggaataagagagtgatcctctttaaacacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgccagggagataagcatcacaccttcaaggaataagagagtgatcctctttaaacacg 440
Query: 241 cggacgggaagcaaggttggccagaaatctaactgggctacacaaaatcaaaagcatgct 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 cggacgggaagcaaggttggccagaaatctaactgggctaaacaaaatcaaaagcatgct 500
Query: 301 ggcactcccatttg 314
| ||||||||||||
Sbjct: 501 gtcactcccatttg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
